Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   AB4922_RS11495 Genome accession   NZ_CP162911
Coordinates   2240193..2240963 (-) Length   256 a.a.
NCBI ID   WP_368774534.1    Uniprot ID   A0AB39J0Z3
Organism   Bacillus aerius strain KW1     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2235193..2245963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4922_RS11475 (AB4922_11475) - 2235286..2236107 (-) 822 WP_008342399.1 pyruvate, water dikinase regulatory protein -
  AB4922_RS11480 (AB4922_11480) - 2236133..2236771 (-) 639 WP_024423017.1 helix-turn-helix transcriptional regulator -
  AB4922_RS11485 (AB4922_11485) glyS 2236938..2238983 (-) 2046 WP_241511284.1 glycine--tRNA ligase subunit beta -
  AB4922_RS11490 (AB4922_11490) glyQ 2238976..2239863 (-) 888 WP_003217487.1 glycine--tRNA ligase subunit alpha -
  AB4922_RS11495 (AB4922_11495) recO 2240193..2240963 (-) 771 WP_368774534.1 DNA repair protein RecO Machinery gene
  AB4922_RS11500 (AB4922_11500) - 2240999..2241142 (-) 144 WP_008342408.1 YqzL family protein -
  AB4922_RS11505 (AB4922_11505) era 2241290..2242195 (-) 906 WP_007501305.1 GTPase Era -
  AB4922_RS11510 (AB4922_11510) - 2242188..2242586 (-) 399 WP_008342410.1 cytidine deaminase -
  AB4922_RS11515 (AB4922_11515) - 2242699..2243085 (-) 387 WP_249668928.1 diacylglycerol kinase family protein -
  AB4922_RS11520 (AB4922_11520) ybeY 2243063..2243542 (-) 480 WP_007501310.1 rRNA maturation RNase YbeY -
  AB4922_RS11525 (AB4922_11525) - 2243543..2245633 (-) 2091 WP_181362757.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29327.01 Da        Isoelectric Point: 8.4348

>NTDB_id=1028036 AB4922_RS11495 WP_368774534.1 2240193..2240963(-) (recO) [Bacillus aerius strain KW1]
MLIKSEGIVLRTTDYGETNKIVTLLTREHGKIGVMARGAKKSNSRLSAISQPFLYGTFLIQSSTGLGTLQQGEMMESMRT
IREDLFLTAYAAYMTELLDKGTEEKKPNPYLFELLLQSLRHLNEGTDADIILFIVEVKMLSVMGLKPELDQCVHCGQKEG
QFHFSIRDNGFICRQCFSKDPYKLPLSPAAARLLRLFHYFDLSRLGQVDVKPQTKQEIRQVLDHYYEEYSGLYLKSKKFM
NQIESMKKLMDGENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=1028036 AB4922_RS11495 WP_368774534.1 2240193..2240963(-) (recO) [Bacillus aerius strain KW1]
ATGCTCATTAAAAGTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGCTCACTAG
AGAACATGGGAAAATTGGTGTGATGGCAAGAGGCGCTAAGAAATCGAACAGCCGCCTGTCAGCCATAAGCCAGCCGTTTT
TATACGGAACCTTCCTGATCCAATCATCAACAGGACTTGGAACGCTCCAGCAAGGTGAAATGATGGAAAGCATGCGGACC
ATTCGGGAAGATTTATTTCTGACCGCATATGCCGCATATATGACAGAATTACTTGATAAAGGAACAGAAGAAAAGAAGCC
AAACCCTTACTTGTTTGAACTTCTTCTTCAATCTTTACGCCATCTCAATGAAGGCACAGATGCTGATATTATTTTATTTA
TCGTAGAGGTTAAAATGCTGTCAGTGATGGGGTTGAAGCCTGAACTGGACCAATGTGTACACTGCGGTCAAAAAGAAGGG
CAGTTCCATTTCTCAATTAGAGATAACGGATTCATCTGTAGGCAATGCTTTTCTAAAGATCCATATAAACTGCCCTTATC
CCCAGCAGCAGCAAGACTGCTCCGTTTGTTTCATTATTTTGATTTATCAAGGCTTGGTCAGGTTGACGTGAAACCACAAA
CGAAACAAGAAATTCGTCAAGTGCTCGATCATTATTATGAAGAGTATTCAGGTCTTTATTTAAAATCAAAAAAATTCATG
AATCAAATCGAATCCATGAAAAAGCTAATGGACGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

75.391

100

0.754

Multiple sequence alignment