Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   AB4922_RS10015 Genome accession   NZ_CP162911
Coordinates   1976404..1977039 (+) Length   211 a.a.
NCBI ID   WP_072368256.1    Uniprot ID   A0AB39J9W8
Organism   Bacillus aerius strain KW1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1971404..1982039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4922_RS09975 (AB4922_09975) - 1971566..1972684 (+) 1119 WP_025207530.1 NADH-dependent flavin oxidoreductase -
  AB4922_RS09980 (AB4922_09980) - 1972736..1973242 (-) 507 WP_008344623.1 PTS glucose transporter subunit IIA -
  AB4922_RS09985 (AB4922_09985) - 1973411..1973830 (+) 420 WP_035391689.1 Hsp20/alpha crystallin family protein -
  AB4922_RS09990 (AB4922_09990) - 1973852..1974304 (-) 453 WP_017359729.1 YppG family protein -
  AB4922_RS09995 (AB4922_09995) - 1974413..1974793 (-) 381 WP_231493314.1 YppE family protein -
  AB4922_RS10000 (AB4922_10000) - 1974843..1975076 (-) 234 WP_231131595.1 DUF5446 family protein -
  AB4922_RS10005 (AB4922_10005) sspM 1975273..1975377 (+) 105 WP_017359731.1 acid-soluble spore protein SspM -
  AB4922_RS10010 (AB4922_10010) - 1975401..1976357 (-) 957 WP_017359732.1 DUF2515 domain-containing protein -
  AB4922_RS10015 (AB4922_10015) recU 1976404..1977039 (+) 636 WP_072368256.1 Holliday junction resolvase RecU Machinery gene
  AB4922_RS10020 (AB4922_10020) - 1977059..1979746 (+) 2688 WP_019744017.1 PBP1A family penicillin-binding protein -
  AB4922_RS10025 (AB4922_10025) - 1979782..1980291 (-) 510 WP_019744018.1 YpoC family protein -
  AB4922_RS10030 (AB4922_10030) nth 1980288..1980950 (-) 663 WP_008344602.1 endonuclease III -
  AB4922_RS10035 (AB4922_10035) - 1980968..1981672 (-) 705 WP_007500879.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24383.71 Da        Isoelectric Point: 9.7581

>NTDB_id=1028030 AB4922_RS10015 WP_072368256.1 1976404..1977039(+) (recU) [Bacillus aerius strain KW1]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLSATDLFFFWERQQ
QNGRKSISKDELMEAGHLMTLGYSPRIDYIKVVETLHFSDDRKQHLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1028030 AB4922_RS10015 WP_072368256.1 1976404..1977039(+) (recU) [Bacillus aerius strain KW1]
ATGATTCGGTATCCTAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCATC
TTATAGTAACCGCGGGATGACGCTTGAAGCTGACTTAAATGAAACGAACCAGTACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCTGTTCAAATTGTCAATGTGGATTATCCAAAAAGAAGCGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCCTCCACAACAGACTACAACGGGGTATACAAAGGGCGTTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACCACCTCGTTTCCACTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTTGTTATTATATCCGCATTTGGTTCCGTTTATTATTTGTCCGCTACTGACCTCTTCTTCTTTTGGGAGCGGCAGCAG
CAAAACGGCCGTAAATCCATTAGCAAAGATGAATTAATGGAAGCAGGTCACCTCATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGACAGGAAGCAACATTTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

73.367

94.313

0.692

Multiple sequence alignment