Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   AB4922_RS08595 Genome accession   NZ_CP162911
Coordinates   1698327..1698707 (+) Length   126 a.a.
NCBI ID   WP_368775101.1    Uniprot ID   A0AB39JAC0
Organism   Bacillus aerius strain KW1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1693327..1703707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4922_RS08585 (AB4922_08585) - 1695050..1695958 (+) 909 WP_008343827.1 serine protease -
  AB4922_RS08590 (AB4922_08590) - 1696105..1698099 (+) 1995 WP_368775064.1 glycosyltransferase family 39 protein -
  AB4922_RS08595 (AB4922_08595) nucA/comI 1698327..1698707 (+) 381 WP_368775101.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  AB4922_RS08600 (AB4922_08600) - 1698851..1699699 (+) 849 WP_368775065.1 STAS domain-containing protein -
  AB4922_RS08605 (AB4922_08605) - 1699732..1700274 (-) 543 WP_076821645.1 IseA DL-endopeptidase inhibitor family protein -
  AB4922_RS08610 (AB4922_08610) - 1700576..1701019 (+) 444 WP_008343821.1 hypothetical protein -
  AB4922_RS08615 (AB4922_08615) lexA 1701067..1701687 (-) 621 WP_007499350.1 transcriptional repressor LexA -
  AB4922_RS08620 (AB4922_08620) yneA 1701847..1702158 (+) 312 WP_007499348.1 cell division suppressor protein YneA -
  AB4922_RS08625 (AB4922_08625) - 1702176..1702823 (+) 648 WP_025207396.1 recombinase family protein -
  AB4922_RS08630 (AB4922_08630) - 1702893..1703123 (+) 231 WP_008343816.1 DUF896 domain-containing protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13830.45 Da        Isoelectric Point: 7.3218

>NTDB_id=1028029 AB4922_RS08595 WP_368775101.1 1698327..1698707(+) (nucA/comI) [Bacillus aerius strain KW1]
MGALLGGFGEDRSAKGADRYDHVIQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWVGHQISGYPDEKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=1028029 AB4922_RS08595 WP_368775101.1 1698327..1698707(+) (nucA/comI) [Bacillus aerius strain KW1]
ATGGGTGCGTTATTAGGTGGTTTTGGAGAGGATCGTTCCGCAAAAGGGGCAGATCGTTATGATCATGTGATTCAATTTCC
TAAGGAACGGTATCCTGAAACAGGCAGTCATATTCAAGAAGCTATTCGAAAAGGGCACTCAGATGTGTGTACCATTGACC
GAAATGGGGCAGATGCCCGCAGGCAAGAATCATTAAAAGGAATTCCCACAAAACCTGGTTTTGACCGGGATGAATGGCCG
ATGGCAGTGTGTCTTGAAGGAGGAAAGGGGGCGAGCGTTCAATATGTCAGTCCATCAGATAATAGAGGCGCTGGTTCATG
GGTCGGGCATCAAATCAGCGGGTATCCTGACGAGAAACGAATTTTATTTATTGTCAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

57.983

94.444

0.548

Multiple sequence alignment