Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   AB4922_RS01920 Genome accession   NZ_CP162911
Coordinates   356629..357057 (-) Length   142 a.a.
NCBI ID   WP_368774858.1    Uniprot ID   A0AB39J5S7
Organism   Bacillus aerius strain KW1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 351629..362057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4922_RS01890 (AB4922_01890) - 351774..352103 (+) 330 WP_007498247.1 YckD family protein -
  AB4922_RS01895 (AB4922_01895) - 352150..352914 (-) 765 WP_039963201.1 MBL fold metallo-hydrolase -
  AB4922_RS01900 (AB4922_01900) - 353030..353449 (+) 420 WP_008347846.1 Lrp/AsnC family transcriptional regulator -
  AB4922_RS01905 (AB4922_01905) - 353474..354280 (+) 807 WP_368774856.1 aminoglycoside N(3)-acetyltransferase -
  AB4922_RS01910 (AB4922_01910) comJ 354282..354668 (-) 387 WP_368774857.1 competence protein ComJ -
  AB4922_RS01915 (AB4922_01915) - 354805..356502 (-) 1698 WP_035703163.1 methyl-accepting chemotaxis protein -
  AB4922_RS01920 (AB4922_01920) nucA/comI 356629..357057 (-) 429 WP_368774858.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  AB4922_RS01925 (AB4922_01925) - 357424..359493 (+) 2070 WP_368774859.1 hydantoinase/oxoprolinase family protein -
  AB4922_RS01930 (AB4922_01930) - 359483..361468 (+) 1986 WP_017366593.1 hydantoinase B/oxoprolinase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15911.89 Da        Isoelectric Point: 6.2203

>NTDB_id=1028003 AB4922_RS01920 WP_368774858.1 356629..357057(-) (nucA/comI) [Bacillus aerius strain KW1]
MKLLKTILLLLLIVIGIATGYVQLGQHKQETTNSSYDKTIHFPSDRYPETAKHIEEAIDEGHSSICTIDRKNSDEQRDIS
LHGIPTKRGYDRDEWPMAMCKEGGAGASVKYVRPSDNRGAGSWVSHQLSDDPDGTRIQFIIE

Nucleotide


Download         Length: 429 bp        

>NTDB_id=1028003 AB4922_RS01920 WP_368774858.1 356629..357057(-) (nucA/comI) [Bacillus aerius strain KW1]
ATGAAACTTCTTAAAACCATTCTCTTGCTTTTATTGATTGTCATTGGTATAGCGACAGGCTATGTCCAACTAGGGCAACA
TAAACAAGAGACGACAAACTCTTCTTATGACAAAACCATTCACTTTCCATCAGATCGATATCCAGAAACCGCGAAGCACA
TAGAAGAAGCTATTGACGAAGGTCATTCTTCCATTTGCACCATTGATCGAAAAAATAGTGATGAGCAAAGAGACATATCA
CTTCATGGCATTCCAACAAAGCGTGGTTATGATCGTGATGAATGGCCAATGGCGATGTGTAAAGAAGGTGGAGCAGGGGC
TTCTGTCAAATATGTACGTCCTTCGGATAATAGGGGGGCAGGCTCTTGGGTAAGTCATCAATTATCAGATGATCCTGATG
GCACAAGAATCCAATTTATTATCGAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(46-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

68.224

75.352

0.514

Multiple sequence alignment