Detailed information NTG1027998

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: WHOZ_RS03355
• Genome accession: NZ_LT592146
• Coordinates: 534482..537061 (-)
• Length: 859 a.a.
• NCBI ID: WP_003695056.1
• Uniprot ID: -
• Organism: Neisseria gonorrhoeae strain WHO O
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 529482..542061

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WHOZ_RS03325 (WHOO_00582C)	-	529516..530226 (-)	711	WP_003690977.1	phosphoglycolate phosphatase	-
WHOZ_RS03335 (WHOO_00585)	-	530621..531840 (+)	1220	Protein_550	Glu/Leu/Phe/Val family dehydrogenase	-
WHOZ_RS03340 (WHOO_00587C)	-	531900..532706 (-)	807	WP_003690982.1	DUF4198 domain-containing protein	-
WHOZ_RS03345 (WHOO_00588)	-	532898..533107 (+)	210	WP_003688192.1	tautomerase family protein	-
WHOZ_RS03350 (WHOO_00589)	-	533196..534410 (+)	1215	WP_047919685.1	pyridoxal phosphate-dependent aminotransferase	-
WHOZ_RS03355 (WHOO_00590C)	clpC	534482..537061 (-)	2580	WP_003695056.1	ATP-dependent chaperone ClpB	Regulator
WHOZ_RS03360 (WHOO_00591)	trpS	537321..538331 (+)	1011	WP_003688198.1	tryptophan--tRNA ligase	-
WHOZ_RS03365 (WHOO_00592)	-	538412..538957 (+)	546	WP_003690987.1	hypothetical protein	-
WHOZ_RS03375 (WHOO_00593)	-	539274..539618 (+)	345	WP_010360341.1	Ag473 family lipoprotein	-
WHOZ_RS03380 (WHOO_00594C)	ppx	539828..541336 (-)	1509	WP_003688205.1	exopolyphosphatase	-

Sequence

Protein

• Length: 859 a.a.
• Molecular weight: 95101.50 Da
• Isoelectric Point: 5.3671

>NTDB_id=1027998 WHOZ_RS03355 WP_003695056.1 534482..537061(-) (clpC) [Neisseria gonorrhoeae strain WHO O]
MRYDKLTAKFQQALAEAQSLALAADSSYLEAGFVLKALLDDQNSGAAALLAHAGVNVPQVKQRLQQHLNSLPKVSGQGGE
ILPSRELQAVLNLMDKAATKRGDAYIASELFLLALVQQNDAAGKILKEAGATEQNINAAIDAVRGGQNVNDANAEDQRDA
LKKYTLDLTQRARDGKLDPVIGRDDEIRRAIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGEVPESLRNKRLLVL
DLAALIAGAKYRGEFEERLKGVLNDLAKDDGNTLIFIDEIHTLVGAGKTDGAMDAGNMLKPTLARGELHCIGATTLDEYR
QYIEKDAALERRFQKVLVGEPSVEDTIAILRGLQERYEIHHGIDITDPAIVAAAELSDRYITDRFLPDKAIDLIDEAASR
VKMEKETKPEAMDKIDRRLIQLRMEKAHVEKEKDDASKKRLELIDEEIDGLQKEYADLDEIWKAEKAISDGAANIKKQID
EVKIKIEQAKRQGDLALASKLMYEDLEHLEKQRAAAERADTDSTKPANKLLRNNVGAEEIAEVVSRMTGIPVSKMMEGER
DKLLKMEEVLHRRVVGQNEAVRAVSDAIRRSRSGLADPNKPYGSFLFLGPTGVGKTELCKALAGFLFDSEDHLIRIDMSE
YMEKHAVARLIGAPPGYVGYEEGGYLTEQVRRKPHSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFKNTVIVM
TSNIGSQHIQQMGTQDYEAVKEVVMEDVKEHFRPEMINRIDEVVVFHGLDQANIRSIAKIQLKGLEKRLEKQNLRLTVSD
AALDIIAKAGFDPIYGARPLKRAIQSEIENPLAKALLAGNYAPESEIKVEADGDRLKFA

Nucleotide

• Length: 2580 bp

>NTDB_id=1027998 WHOZ_RS03355 WP_003695056.1 534482..537061(-) (clpC) [Neisseria gonorrhoeae strain WHO O]
ATGCGATACGACAAATTAACCGCCAAATTCCAACAAGCCCTTGCAGAAGCTCAGAGTTTGGCGTTGGCTGCGGACAGCAG
CTATCTGGAAGCAGGTTTCGTACTGAAAGCCCTGCTTGACGACCAAAACAGCGGAGCTGCCGCGCTCTTGGCTCATGCGG
GCGTGAACGTGCCGCAGGTTAAACAGCGTTTGCAGCAGCATTTGAACAGCCTGCCGAAAGTGTCCGGACAAGGTGGTGAG
ATTCTGCCCAGCCGCGAATTGCAGGCGGTGTTGAACCTGATGGACAAAGCGGCAACCAAACGCGGCGATGCCTATATCGC
CAGCGAACTTTTCCTGCTCGCCTTGGTGCAGCAGAACGATGCGGCCGGCAAAATCTTGAAAGAAGCCGGTGCGACCGAAC
AAAATATCAATGCCGCGATCGATGCGGTACGAGGCGGACAAAACGTGAACGATGCGAATGCCGAAGACCAACGCGATGCT
TTGAAAAAATACACGCTCGATCTGACCCAACGCGCCCGAGACGGTAAGCTCGACCCCGTTATCGGTCGTGATGATGAAAT
CCGCCGCGCGATTCAGGTGCTGCAACGCCGCACCAAAAACAACCCCGTGCTGATTGGCGAACCCGGTGTGGGTAAAACCG
CCATCGTCGAAGGTTTGGCGCAACGCATCGTCAACGGCGAAGTACCTGAATCCCTGCGTAACAAACGCCTGCTGGTTTTG
GATTTGGCGGCTTTGATTGCCGGTGCGAAATACCGTGGCGAATTTGAAGAACGCTTGAAAGGCGTATTGAACGATTTGGC
GAAAGACGACGGCAACACCCTGATTTTCATCGATGAAATCCATACTTTGGTCGGCGCGGGCAAAACCGACGGCGCGATGG
ACGCGGGCAATATGTTGAAACCGACCTTGGCGCGGGGCGAACTGCACTGTATCGGTGCGACTACTTTGGACGAATACCGC
CAATACATCGAAAAAGACGCGGCACTCGAACGCCGTTTCCAAAAAGTATTGGTCGGCGAACCCAGCGTGGAAGACACCAT
CGCTATCCTGCGCGGTTTGCAGGAACGTTACGAAATCCACCACGGCATCGATATTACCGACCCTGCTATCGTTGCCGCAG
CGGAGTTGAGCGACCGCTACATTACCGACCGCTTCCTGCCCGACAAGGCGATTGATTTGATTGACGAAGCTGCCAGCCGT
GTCAAGATGGAAAAAGAAACCAAACCGGAAGCTATGGACAAAATCGACCGCCGTTTGATTCAGCTTCGGATGGAAAAGGC
GCACGTTGAAAAAGAAAAAGACGATGCCAGCAAAAAACGTTTGGAACTGATAGACGAGGAAATCGACGGCTTGCAAAAAG
AATACGCCGATTTGGACGAAATCTGGAAAGCCGAAAAAGCGATTTCAGACGGTGCTGCCAATATTAAGAAACAAATTGAC
GAAGTCAAAATTAAAATCGAACAGGCAAAACGGCAAGGCGATTTGGCACTGGCTTCAAAATTGATGTATGAAGATTTGGA
GCATTTGGAAAAACAGCGTGCAGCCGCCGAACGGGCAGATACGGACAGCACAAAACCGGCAAACAAACTCTTGCGTAATA
ATGTCGGCGCGGAGGAAATCGCAGAAGTGGTTTCCCGTATGACCGGCATCCCCGTGTCAAAAATGATGGAAGGCGAACGC
GACAAACTGCTAAAGATGGAAGAAGTATTGCACCGCCGCGTAGTCGGTCAAAACGAAGCCGTGCGCGCCGTGTCCGATGC
CATCCGCCGCAGCCGCTCCGGCCTTGCCGATCCGAACAAACCTTACGGCAGCTTCCTGTTCTTAGGCCCGACCGGTGTGG
GTAAGACCGAGTTGTGCAAAGCTTTGGCAGGCTTCCTGTTCGACAGCGAAGACCACCTCATCCGCATCGACATGTCCGAA
TACATGGAAAAACACGCCGTTGCCCGCTTAATCGGCGCGCCTCCGGGTTATGTCGGATACGAAGAGGGCGGCTACCTGAC
CGAACAAGTCCGCCGCAAACCGCACAGCGTGATTCTTTTGGACGAAGTGGAAAAAGCCCATCCCGACGTATTCAACATCC
TGCTGCAAGTATTGGATGACGGTCGTTTGACCGACGGACAAGGCAGGACGGTAGATTTTAAAAATACCGTGATTGTGATG
ACTTCCAACATCGGCAGCCAGCACATCCAACAAATGGGCACGCAGGACTACGAAGCGGTGAAAGAAGTTGTGATGGAGGA
TGTGAAAGAACATTTCCGTCCGGAAATGATCAACCGCATCGACGAAGTGGTCGTGTTCCATGGCTTGGATCAGGCCAATA
TCCGCAGTATTGCGAAAATCCAGCTCAAAGGTTTGGAAAAACGTTTGGAAAAACAAAACCTGCGCCTGACTGTTTCCGAT
GCCGCTCTGGACATCATCGCCAAAGCCGGTTTCGACCCGATTTACGGCGCACGTCCGCTCAAACGCGCGATCCAATCGGA
AATCGAAAACCCGCTGGCCAAAGCCCTGCTTGCCGGAAACTATGCGCCCGAAAGCGAAATCAAAGTAGAAGCCGACGGCG
ACAGACTGAAATTTGCCTGA

Domains

Predicted by InterProScan.

• Clp amino terminal domain, pathogenicity island component (Clp_N) (96-145)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (17-68)

• AAA lid domain (AAA_lid_9) (342-442)

• ATPase family associated with various cellular activities (AAA) (AAA) (203-336)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (769-849)

• AAA domain (Cdc48 subfamily) (AAA_2) (601-763)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	45.465	100	0.455
clpC	Streptococcus pneumoniae TIGR4	39.092	100	0.411
clpC	Streptococcus pneumoniae D39	39.092	100	0.411
clpC	Streptococcus pneumoniae Rx1	39.092	100	0.411
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	38.393	100	0.4
clpC	Lactococcus lactis subsp. cremoris KW2	46.552	81.024	0.377
clpE	Streptococcus pneumoniae TIGR4	46.628	79.395	0.37
clpE	Streptococcus pneumoniae R6	46.21	79.86	0.369
clpE	Streptococcus pneumoniae D39	46.21	79.86	0.369
clpE	Streptococcus pneumoniae Rx1	46.21	79.86	0.369