Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   AB4L27_RS11240 Genome accession   NZ_CP162907
Coordinates   2399069..2400097 (-) Length   342 a.a.
NCBI ID   WP_254901949.1    Uniprot ID   -
Organism   Vibrio diabolicus strain 3098     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2394069..2405097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4L27_RS11220 (AB4L27_11220) - 2394382..2395299 (-) 918 WP_005397953.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  AB4L27_RS11225 (AB4L27_11225) hslU 2396274..2397605 (-) 1332 WP_006742475.1 HslU--HslV peptidase ATPase subunit -
  AB4L27_RS11230 (AB4L27_11230) hslV 2397629..2398180 (-) 552 WP_005383176.1 ATP-dependent protease subunit HslV -
  AB4L27_RS11235 (AB4L27_11235) ftsN 2398296..2398844 (-) 549 WP_053809480.1 cell division protein FtsN -
  AB4L27_RS11240 (AB4L27_11240) cytR 2399069..2400097 (-) 1029 WP_254901949.1 DNA-binding transcriptional regulator CytR Regulator
  AB4L27_RS11245 (AB4L27_11245) priA 2400402..2402603 (-) 2202 WP_368848782.1 primosomal protein N' -
  AB4L27_RS11250 (AB4L27_11250) rpmE 2402899..2403120 (+) 222 WP_005379546.1 50S ribosomal protein L31 -
  AB4L27_RS11255 (AB4L27_11255) rpsJ 2403576..2403887 (+) 312 WP_004410492.1 30S ribosomal protein S10 -
  AB4L27_RS11260 (AB4L27_11260) rplC 2403902..2404531 (+) 630 WP_005379555.1 50S ribosomal protein L3 -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 37765.46 Da        Isoelectric Point: 6.4948

>NTDB_id=1027986 AB4L27_RS11240 WP_254901949.1 2399069..2400097(-) (cytR) [Vibrio diabolicus strain 3098]
MNERLKTMATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPY
FSEIIRGIEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELEL
PTVHIDNLTSAFEAVNYLTQLGHKRIAQISGPDTAILCQFRQQGYQQALRRAGINKDPQYSVITEFSFDGGAKAVRKLLE
LPEPPTAIFCHCDTMAIGAIQEAKKLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLEMLKGHDVH
SGSRLLETNLVIRGSAAPPQRP

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=1027986 AB4L27_RS11240 WP_254901949.1 2399069..2400097(-) (cytR) [Vibrio diabolicus strain 3098]
ATAAACGAGAGGTTAAAAACTATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCTACGGCTACGGTATCTCG
AGCATTAATGAACCCTGAGAAGGTCTCTTCTTCAACGAGAAAAAGAGTAGAAGATGCCGTACTTGAAGCGGGTTATTCTC
CAAACTCATTAGCGCGTAACTTACGTAGAAACGAATCAAAAACCATTGTCACTATCGTTCCCGACATCTGTGATCCTTAT
TTTTCTGAAATTATTCGCGGTATTGAAGATGCTGCCATGGAACATGGCTATCTAGTCCTGCTGGGCGATAGCGGACAACA
GAAGAAACGTGAAAGTTCTTTCGTTAACCTCGTATTTACTAAGCAGGCAGATGGAATGCTACTGCTTGGCACAGATCTAC
CGTTCGATGTCAGTAAGCCAGAGCAAAAGAACTTACCTCCGATGGTAATGGCGTGTGAATTTGCGCCTGAACTCGAGCTT
CCGACAGTACACATTGATAACCTGACCTCAGCATTTGAAGCGGTGAATTACCTAACCCAATTAGGTCATAAACGCATTGC
TCAAATCTCTGGACCAGATACAGCAATATTGTGTCAGTTCCGCCAGCAAGGCTACCAACAAGCCCTGCGCCGTGCCGGCA
TCAATAAAGATCCACAATATAGTGTCATTACTGAGTTCTCTTTTGATGGCGGAGCAAAAGCCGTTCGTAAACTGCTCGAA
TTGCCAGAGCCACCAACGGCTATTTTCTGCCACTGTGACACAATGGCCATCGGCGCAATTCAAGAAGCGAAAAAGCTTGG
CTTACGAGTACCGCAAGATCTCTCTGTTGTAGGCTTTGATGACATTAACTTCGCTCAGTACTGCGATCCACCGTTGACCA
CTATCTCTCAGCCTCGCTATGAGATTGGTCGACAAGCGATGCTAATGATGCTTGAGATGTTAAAAGGACACGACGTGCAT
TCAGGCTCGCGCCTACTTGAAACTAACCTCGTCATTCGCGGAAGTGCAGCGCCACCACAGCGCCCTTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(175-335)

Bacterial regulatory proteins, lacI family (LacI)

(10-55)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

97.935

99.123

0.971
  cytR Vibrio cholerae C6706

89.521

97.661

0.874

Multiple sequence alignment