Detailed information NTG1027967

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AB4L27_RS06780
• Genome accession: NZ_CP162907
• Coordinates: 1466683..1467675 (-)
• Length: 330 a.a.
• NCBI ID: WP_368849069.1
• Uniprot ID: -
• Organism: Vibrio diabolicus strain 3098
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1461683..1472675

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB4L27_RS06765 (AB4L27_06765)	recA	1462228..1463271 (-)	1044	WP_005393872.1	recombinase RecA	Machinery gene
AB4L27_RS06770 (AB4L27_06770)	pncC	1463472..1463954 (-)	483	WP_368849068.1	nicotinamide-nucleotide amidase	-
AB4L27_RS06775 (AB4L27_06775)	mutS	1464039..1466600 (+)	2562	WP_006743294.1	DNA mismatch repair protein MutS	-
AB4L27_RS06780 (AB4L27_06780)	rpoS	1466683..1467675 (-)	993	WP_368849069.1	RNA polymerase sigma factor RpoS	Regulator
AB4L27_RS06785 (AB4L27_06785)	-	1467756..1468679 (-)	924	WP_065646114.1	peptidoglycan DD-metalloendopeptidase family protein	-
AB4L27_RS06790 (AB4L27_06790)	-	1468693..1469319 (-)	627	WP_053807562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
AB4L27_RS06795 (AB4L27_06795)	surE	1469319..1470095 (-)	777	WP_046875092.1	5'/3'-nucleotidase SurE	-
AB4L27_RS06800 (AB4L27_06800)	truD	1470095..1471138 (-)	1044	WP_317411430.1	tRNA pseudouridine(13) synthase TruD	-
AB4L27_RS06805 (AB4L27_06805)	ispF	1471185..1471661 (-)	477	WP_012841409.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AB4L27_RS06810 (AB4L27_06810)	ispD	1471679..1472383 (-)	705	WP_256935759.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AB4L27_RS06815 (AB4L27_06815)	ftsB	1472385..1472666 (-)	282	WP_005380907.1	cell division protein FtsB	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37795.76 Da
• Isoelectric Point: 4.8418

>NTDB_id=1027967 AB4L27_RS06780 WP_368849069.1 1466683..1467675(-) (rpoS) [Vibrio diabolicus strain 3098]
MYKQHSNQVTKVEEFAFDNASVKTIDNELEKSSSTESKTVAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRA
LRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTR
TIRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANN
SDPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLN
MENLFNVEDD

Nucleotide

• Length: 993 bp

>NTDB_id=1027967 AB4L27_RS06780 WP_368849069.1 1466683..1467675(-) (rpoS) [Vibrio diabolicus strain 3098]
ATGTATAAGCAACACAGTAACCAAGTAACCAAAGTTGAAGAGTTTGCATTTGACAATGCGTCAGTGAAGACCATTGATAA
CGAACTCGAAAAATCATCATCCACAGAAAGCAAAACGGTTGCGCGTGAAGAATTTGATGCGAGCAGTAAAAGCTTAGACG
CAACTCAGTTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCCGAAGAAGAAGTGCTTTATGCTCGACGAGCC
TTGCGTGGCGACGAAGCGGCACGTAAACGTATGATCGAAAGTAACCTACGTTTGGTGGTTAAGATCTCTCGTCGATATAG
TAATCGAGGCCTAGCACTACTCGATCTGATTGAAGAAGGTAACCTTGGTTTGATCCGTGCGGTCGAGAAGTTCGATCCAG
AGCGTGGTTTCCGCTTCTCTACTTATGCGACCTGGTGGATCCGACAAACGATCGAACGTGCGTTGATGAACCAAACTCGC
ACGATCCGTCTACCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAGAAGCTCGA
TCACGAACCTACCGCAGAAGAAATTGCTGCTCAGTTAGATATTCCAGTCGAAGATGTAAGCAAAATGCTACGCCTTAACG
AGCGTATTAGTTCTGTCGACACACCAATCGGTGGTGACGGTGAAAAAGCGCTGTTGGATATTATTCCCGACGCAAACAAC
TCCGATCCAGAAGTCTCGACTCAAGATGACGATATCAAATCATCGCTGATTCATTGGTTAGAAGAGTTGAATCCAAAACA
GAAAGAAGTACTTGCACGACGTTTTGGTCTTCTAGGCTATGAGCCTTCGACGCTTGAAGAAGTTGGTCGAGAGATTGGTT
TGACACGTGAGCGTGTACGTCAAATCCAAGTAGAAGGTTTACGTCGTCTTCGTGAGGTTTTAATCAAGCAAGGTTTGAAT
ATGGAAAACTTATTTAACGTCGAAGATGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 2 (Sigma70_r2) (91-160)

• Sigma-70, region 4 (Sigma70_r4) (259-312)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (53-86)

• Sigma-70 region 3 (Sigma70_r3) (171-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.686	100	0.839