Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AB4L27_RS06650 Genome accession   NZ_CP162907
Coordinates   1444510..1445028 (-) Length   172 a.a.
NCBI ID   WP_048625973.1    Uniprot ID   -
Organism   Vibrio diabolicus strain 3098     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1439510..1450028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4L27_RS06625 (AB4L27_06625) rimM 1439575..1440123 (-) 549 WP_005379964.1 ribosome maturation factor RimM -
  AB4L27_RS06630 (AB4L27_06630) rpsP 1440153..1440401 (-) 249 WP_005379962.1 30S ribosomal protein S16 -
  AB4L27_RS06635 (AB4L27_06635) ffh 1440611..1441993 (-) 1383 WP_005385423.1 signal recognition particle protein -
  AB4L27_RS06640 (AB4L27_06640) - 1442218..1443012 (+) 795 WP_005396694.1 inner membrane protein YpjD -
  AB4L27_RS06645 (AB4L27_06645) - 1443137..1444405 (+) 1269 WP_005396696.1 HlyC/CorC family transporter -
  AB4L27_RS06650 (AB4L27_06650) luxS 1444510..1445028 (-) 519 WP_048625973.1 S-ribosylhomocysteine lyase Regulator
  AB4L27_RS06655 (AB4L27_06655) - 1445113..1445718 (-) 606 WP_176320214.1 hypothetical protein -
  AB4L27_RS06660 (AB4L27_06660) gshA 1445743..1447311 (-) 1569 WP_256935749.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19051.75 Da        Isoelectric Point: 4.6153

>NTDB_id=1027964 AB4L27_RS06650 WP_048625973.1 1444510..1445028(-) (luxS) [Vibrio diabolicus strain 3098]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNSDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVESQSKIPELNEYQCGTAAMHSLEEAQQIAKSILDAGVSVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1027964 AB4L27_RS06650 WP_048625973.1 1444510..1445028(-) (luxS) [Vibrio diabolicus strain 3098]
ATGCCTTTACTCGATAGTTTTACCGTGGACCACACTCGCATGAATGCACCGGCAGTGCGAGTGGCGAAGACCATGCAGAC
CCCAAAAGGGGACACGATTACTGTCTTCGATTTACGCTTTACCGCGCCAAACAAAGACATCCTTTCTGAAAAAGGTATCC
ATACACTAGAGCACCTTTATGCAGGTTTTATGCGCAATCACCTAAACAGCGATTCTGTTGAGATCATCGATATTTCGCCT
ATGGGTTGCCGCACCGGCTTTTACATGAGCCTGATCGGCACTCCATCAGAGCAGCAAGTAGCGGATGCTTGGATTGCGGC
AATGGAAGACGTACTAAAGGTAGAAAGCCAGAGCAAGATCCCTGAACTCAACGAATACCAATGTGGTACGGCAGCGATGC
ACTCTTTAGAAGAAGCACAACAAATCGCGAAGAGCATTTTGGATGCTGGTGTATCGGTGAACAAAAATGATGAACTTGCT
TTGCCTGAATCGATGCTAAAAGAGCTGCGCATCGACTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

86.55

99.419

0.86

Multiple sequence alignment