Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   AB4L27_RS04305 Genome accession   NZ_CP162907
Coordinates   939861..941267 (-) Length   468 a.a.
NCBI ID   WP_005396653.1    Uniprot ID   -
Organism   Vibrio diabolicus strain 3098     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 934861..946267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4L27_RS04270 (AB4L27_04270) moaE 935388..935843 (-) 456 WP_048625774.1 molybdopterin synthase catalytic subunit MoaE -
  AB4L27_RS04275 (AB4L27_04275) moaD 935845..936102 (-) 258 WP_005396646.1 molybdopterin synthase sulfur carrier subunit -
  AB4L27_RS04280 (AB4L27_04280) moaC 936099..936578 (-) 480 WP_005396647.1 cyclic pyranopterin monophosphate synthase MoaC -
  AB4L27_RS04285 (AB4L27_04285) moaB 936605..937117 (-) 513 WP_005396648.1 molybdenum cofactor biosynthesis protein B -
  AB4L27_RS04290 (AB4L27_04290) moaA 937223..938212 (-) 990 WP_005396649.1 GTP 3',8-cyclase MoaA -
  AB4L27_RS04295 (AB4L27_04295) - 938511..939407 (+) 897 WP_006742807.1 YvcK family protein -
  AB4L27_RS04300 (AB4L27_04300) luxU 939520..939864 (-) 345 WP_256956085.1 quorum-sensing phosphorelay protein LuxU -
  AB4L27_RS04305 (AB4L27_04305) luxO 939861..941267 (-) 1407 WP_005396653.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  AB4L27_RS04310 (AB4L27_04310) uvrB 941561..943591 (-) 2031 WP_256935636.1 excinuclease ABC subunit UvrB -
  AB4L27_RS04320 (AB4L27_04320) rsxA 944556..945134 (+) 579 WP_256935637.1 electron transport complex subunit RsxA -
  AB4L27_RS04325 (AB4L27_04325) rsxB 945138..945734 (+) 597 WP_005396655.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 468 a.a.        Molecular weight: 52118.68 Da        Isoelectric Point: 6.2543

>NTDB_id=1027957 AB4L27_RS04305 WP_005396653.1 939861..941267(-) (luxO) [Vibrio diabolicus strain 3098]
MQQKSEGPKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLHAVKKSH
PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQSYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKSFVRFAPDVIDRFNSYEWPGNVRQLQNVLRNIVVLNNGKEITLDMLPPPLNQPLDRPS
SVAKFIEPKVMTASEIMPLWMTEKMAIEQAIEACDGNIPRAAGYLDVSPSTIYRKLQAWNGKEERQKV

Nucleotide


Download         Length: 1407 bp        

>NTDB_id=1027957 AB4L27_RS04305 WP_005396653.1 939861..941267(-) (luxO) [Vibrio diabolicus strain 3098]
ATGCAACAAAAATCTGAAGGTCCTAAATCTCGTTACCTTTTAATGGTTGAGGATACCGCATCTGTTGCGGCACTGTACCG
CTCATACCTGACACCGCTTGGTATAGATATCAATATTGTCGGTACAGGTAGGGATGCCATTGAAAGTCTCAACCATAGAA
TTCCAGATCTTATTCTGCTCGATCTTCGTCTTCCAGATATGACGGGGATGGACGTTTTACACGCTGTAAAAAAGAGTCAT
CCAGACGTACCTATTATTTTTATGACCGCTCACGGTTCTATCGATACCGCGGTAGAAGCAATGCGTCATGGCTCTCAAGA
CTTTTTGATCAAACCGTGTGAAGCTGACCGCTTACGTGTCACGGTTAACAATGCGATTCGTAAAGCGACTAAGTTAAAAA
ACGAGGCTGATAACCCGGGTAATCAAAGTTATCAAGGCTTTATTGGCAGCAGCCAAACTATGCAACAGGTCTACCGTACG
ATTGATTCAGCAGCGAGCAGTAAAGCGAGCATCTTCATCACTGGTGAAAGTGGTACGGGTAAAGAGGTATGCGCCGAGGC
AATCCATGCGGCAAGCAAGCGTGGTGACAAGCCTTTTATTGCGATTAACTGTGCTGCAATTCCAAAAGATTTGATTGAGA
GTGAACTGTTTGGTCACGTGAAAGGTGCTTTTACCGGCGCAGCAAATGATCGTCAGGGTGCAGCGGAATTAGCGGATGGT
GGCACACTTTTCCTTGATGAACTGTGTGAGATGGACTTAGATTTGCAAACCAAATTGCTGCGATTTATTCAAACTGGCAC
GTTCCAAAAAGTGGGCTCATCAAAAATGAAGAGCGTGGATGTTCGCTTTGTTTGTGCAACTAACCGTGACCCATGGAAAG
AGGTACAAGAAGGTCGATTCCGTGAAGATTTGTACTATCGTTTGTATGTCATTCCTTTGCATTTGCCACCTTTACGTGAA
CGAGGTGAAGATGTCATTGAAATTGCATATTCACTGTTAGGCTATATGTCGCACGAAGAAGGAAAAAGCTTCGTACGTTT
TGCGCCTGATGTAATCGACCGATTTAATAGCTATGAGTGGCCTGGCAACGTTCGTCAGCTACAAAACGTGCTGCGCAATA
TCGTTGTTCTAAACAACGGTAAAGAAATCACGTTGGATATGTTACCGCCACCGCTGAATCAACCGCTTGACCGTCCGTCT
TCTGTGGCGAAATTCATTGAGCCGAAAGTGATGACTGCGTCTGAGATTATGCCGTTGTGGATGACAGAAAAAATGGCGAT
AGAGCAAGCGATTGAAGCGTGTGATGGCAATATCCCCCGAGCGGCGGGATACCTTGATGTCAGTCCGTCGACGATTTACC
GCAAGTTACAGGCTTGGAATGGCAAGGAAGAGCGGCAAAAAGTATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Bacterial regulatory protein, Fis family (HTH_8)

(419-459)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

87.082

95.94

0.835

Multiple sequence alignment