Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   AB4L27_RS00535 Genome accession   NZ_CP162907
Coordinates   130122..131543 (-) Length   473 a.a.
NCBI ID   WP_256936211.1    Uniprot ID   -
Organism   Vibrio diabolicus strain 3098     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 125122..136543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4L27_RS00510 (AB4L27_00510) - 125638..126288 (+) 651 WP_046874957.1 thiopurine S-methyltransferase -
  AB4L27_RS00515 (AB4L27_00515) purT 126360..127535 (-) 1176 WP_006741653.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  AB4L27_RS00520 (AB4L27_00520) cdd 127682..128569 (-) 888 WP_005397788.1 cytidine deaminase -
  AB4L27_RS00525 (AB4L27_00525) - 129013..129690 (-) 678 WP_005377888.1 LrgB family protein -
  AB4L27_RS00530 (AB4L27_00530) - 129692..130066 (-) 375 WP_005397786.1 CidA/LrgA family protein -
  AB4L27_RS00535 (AB4L27_00535) sbcB 130122..131543 (-) 1422 WP_256936211.1 exodeoxyribonuclease I Machinery gene
  AB4L27_RS00540 (AB4L27_00540) - 131701..133074 (-) 1374 WP_047008661.1 L-cystine transporter -
  AB4L27_RS00545 (AB4L27_00545) - 133275..133964 (-) 690 WP_046874844.1 NAD(P)H-binding protein -
  AB4L27_RS00550 (AB4L27_00550) cobT 134213..135256 (+) 1044 WP_368848886.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  AB4L27_RS00555 (AB4L27_00555) - 135256..136062 (+) 807 WP_046874846.1 adenosylcobinamide-GDP ribazoletransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54432.68 Da        Isoelectric Point: 4.8658

>NTDB_id=1027955 AB4L27_RS00535 WP_256936211.1 130122..131543(-) (sbcB) [Vibrio diabolicus strain 3098]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQPLADYLPSPEAALITGITPQKTVQEGLSEP
EFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRQKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGELLPVPVKLVHLNKCPILAPAKTLTAENAES
IGIDRQQCLANLALLRQHPEIREKLISLFSVERKFDKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=1027955 AB4L27_RS00535 WP_256936211.1 130122..131543(-) (sbcB) [Vibrio diabolicus strain 3098]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGATTATGAGACATGGGGAACCAACCCCGCGAAAGATCGCCCAAG
CCAGTTTGCTGGTGTTCGTACAGATGAAAACTTTAATATCATCGGCGAGCCTTTAGTCATGTACTGTCAACCACTGGCTG
ATTATCTTCCGTCTCCTGAAGCTGCACTTATTACTGGTATTACTCCGCAAAAAACGGTTCAAGAAGGCCTTTCTGAGCCT
GAGTTTATCGCTAAGATTCACGCTGAACTCGCGAAACCAAATACCACCAGTTTAGGCTACAACAGCATTCGCTTTGATGA
CGAAGTGACACGTTATACTTGTTATCGCAACTTTATCGATCCATACGCATGGAGTTGGCAAAACGGTAACTCGCGTTGGG
ATTTACTCGATGTATTACGCGCGTGCCATGCCCTTCGCCCAGAAGGCGTAGAGTGGCCAGAAAACGAAGATGGCTTCACT
AGTTTTAAATTAGAGCACTTGTCTGTTGCTAACGGCATAGAACATAGTAACGCGCACGATGCGATGGCAGACGTGATTGC
GACTATCGAAATGGCGAAAAAAGTCAAAGCAGCGCAACCAAAATTGTTTGACTACTTCTTTTCTATGCGCCAAAAGCGCA
AGCTCAATGAATTAGTCGACATCGTCAACATGACGCCGTTGATGCACGTTTCAGGCATGCTAGGGCGCGAATGCCAGTAC
ACTAGCTGGATTGTGCCTGTTGCTTGGCACCCAACCAATAATAACGCCGTTATCACTATCGATTTAGCGAAAGACCCTCA
ACCTATTCTTGAGCTATCCGCAGAAGAGCTACACGAAAGACTCTACACTAAGCGAGAAGATCTTGGTGAATTGCTACCAG
TGCCAGTTAAACTAGTTCATTTGAACAAATGCCCTATTCTCGCCCCTGCAAAAACGTTAACGGCTGAAAATGCAGAGTCT
ATTGGCATTGATCGCCAGCAATGTCTCGCTAATCTCGCTTTGTTGCGCCAACATCCTGAAATTAGAGAAAAGTTGATTAG
CCTCTTTTCAGTCGAGCGTAAATTCGATAAAAGTGATGACGTCGATACGCAACTTTACGACGGATTCTTCTCTCCGGCCG
ATCGCGCAGCCATGGATATCATTCGAGAAACCGACCCGAACAATCTTGCCGCATTGGACATTGAATTTGATGACAAGCGC
ATTAAACCTCTATTGTTCCGCTATCGTGCGCGTAACTTCCCAGGCACATTAGACGAGCAAGAACAGAGACGCTGGGCATT
ACACTGTCGAGAAGTGTTTGAAAGCCAAATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCGATATTAAAATCCGTGTACCGTTATGTAGAGAGCTTAGCTTCTTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.704

100

0.797

Multiple sequence alignment