Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AB3Z09_RS08585 Genome accession   NZ_CP162899
Coordinates   1789364..1790734 (+) Length   456 a.a.
NCBI ID   WP_010018662.1    Uniprot ID   A0A4R5NI95
Organism   Companilactobacillus farciminis strain YLR-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1784364..1795734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3Z09_RS08565 (AB3Z09_08565) - 1786310..1787653 (-) 1344 WP_010018657.1 aminopeptidase C -
  AB3Z09_RS08570 (AB3Z09_08570) rpiA 1787678..1788367 (-) 690 WP_010018658.1 ribose-5-phosphate isomerase RpiA -
  AB3Z09_RS08575 (AB3Z09_08575) - 1788368..1788670 (-) 303 WP_010018659.1 GNAT family N-acetyltransferase -
  AB3Z09_RS08580 (AB3Z09_08580) - 1788802..1789344 (+) 543 WP_201306846.1 dUTP diphosphatase -
  AB3Z09_RS08585 (AB3Z09_08585) radA 1789364..1790734 (+) 1371 WP_010018662.1 DNA repair protein RadA Machinery gene
  AB3Z09_RS08590 (AB3Z09_08590) - 1790752..1792050 (+) 1299 WP_010018663.1 PIN/TRAM domain-containing protein -
  AB3Z09_RS08595 (AB3Z09_08595) gltX 1792031..1793527 (+) 1497 WP_010018664.1 glutamate--tRNA ligase -
  AB3Z09_RS08600 (AB3Z09_08600) cysS 1793613..1795019 (+) 1407 WP_368790734.1 cysteine--tRNA ligase -
  AB3Z09_RS08605 (AB3Z09_08605) - 1795012..1795425 (+) 414 WP_010018666.1 Mini-ribonuclease 3 -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49847.32 Da        Isoelectric Point: 8.0221

>NTDB_id=1027924 AB3Z09_RS08585 WP_010018662.1 1789364..1790734(+) (radA) [Companilactobacillus farciminis strain YLR-1]
MAKAKTKFVCQNCGYVSPKYLGRCPNCGVWNQMVEEVDQATVKASATPSRRVSDLESKPVKIGDVSFEREPRIKTDMDEL
NRVLGGGIVPGSLILIGGDPGIGKSTLLTQVSGQLQKTGGKVLYVSGEESASQIKMRADRLGIKGDNLYIYPQTDMSYIR
QTIDDMKPDFLIIDSVQTMDEPEISSAVGSISQIREVTAELMNIAKQQNITVFVVGHVTKGGAIAGPKILEHMVDTVLYF
EGDTHHSYRILRSVKNRFGSTNEIGIFEMRTKGLVEVANPSEIFLEERLANANGSAVVVSMEGTRPILVEIQSLITPTVF
GNAKRTATGLDHNRVSVIMAVLEKRGNLMLQNQDAYLKSTGGVKLDEPAIDLALAMSIASSYKNMGIPGTDCFVGEVGLT
GEVRRVNRIDQRVNEAEKLGFKRIFIPKNNLGDWSKNNKIQIIGVSTVSDAMNKIF

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=1027924 AB3Z09_RS08585 WP_010018662.1 1789364..1790734(+) (radA) [Companilactobacillus farciminis strain YLR-1]
TTGGCTAAAGCTAAAACAAAATTCGTATGTCAAAACTGTGGTTACGTCTCACCAAAATATTTAGGGCGTTGTCCTAACTG
TGGCGTTTGGAATCAAATGGTCGAAGAAGTCGATCAAGCAACTGTCAAAGCTAGTGCTACACCTAGTCGTCGCGTGAGTG
ATTTGGAATCTAAACCAGTTAAGATTGGGGATGTCTCATTTGAAAGAGAGCCTCGTATCAAGACTGATATGGACGAACTA
AATCGAGTACTCGGTGGCGGAATCGTGCCGGGGTCTTTGATTTTAATTGGTGGAGATCCAGGAATTGGTAAATCAACGCT
TTTGACCCAAGTTTCGGGACAACTCCAAAAGACCGGTGGCAAAGTTTTGTACGTTTCTGGTGAAGAGAGTGCTTCTCAAA
TTAAGATGCGTGCTGACCGTTTAGGTATCAAAGGCGACAACTTATACATTTATCCACAAACGGATATGAGTTATATTCGT
CAAACAATCGATGATATGAAACCAGACTTTTTGATTATCGATTCCGTGCAGACGATGGATGAGCCAGAGATTTCTTCAGC
AGTCGGTAGTATTTCGCAGATTCGTGAAGTAACGGCTGAATTGATGAACATCGCTAAACAGCAAAATATCACCGTCTTTG
TCGTTGGACATGTGACTAAAGGTGGCGCCATCGCGGGACCAAAGATTTTGGAACACATGGTGGATACGGTTTTATATTTT
GAGGGTGACACTCATCACAGTTATCGAATTTTACGTTCAGTCAAAAACCGTTTTGGTTCGACTAACGAAATCGGTATTTT
TGAGATGCGAACGAAAGGACTAGTTGAAGTGGCTAATCCTTCAGAAATCTTCTTAGAAGAGCGTTTAGCTAATGCCAATG
GTTCTGCAGTGGTAGTTTCAATGGAAGGAACGAGACCAATTTTGGTTGAAATTCAATCCTTGATCACACCAACTGTTTTT
GGGAACGCTAAGAGAACTGCAACTGGATTAGATCATAATCGAGTTTCCGTTATCATGGCGGTACTAGAAAAACGTGGTAA
TTTGATGCTCCAAAATCAGGATGCTTATTTGAAGTCTACTGGTGGCGTAAAATTAGATGAGCCAGCAATCGATTTAGCTT
TGGCGATGTCAATTGCTTCAAGTTATAAGAATATGGGTATCCCTGGAACTGACTGTTTCGTTGGTGAAGTTGGTTTGACT
GGTGAAGTAAGACGAGTCAATCGAATCGATCAACGGGTCAATGAAGCTGAGAAATTAGGTTTCAAGCGAATCTTTATTCC
TAAGAACAATCTTGGCGACTGGTCCAAAAATAATAAGATTCAAATCATCGGTGTCAGTACCGTGTCAGACGCTATGAACA
AAATATTCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(58-222)

Subunit ChlI of Mg-chelatase (ChlI)

(366-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4R5NI95

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

64.912

100

0.649
  radA Streptococcus pneumoniae D39

64.912

100

0.649
  radA Streptococcus pneumoniae R6

64.912

100

0.649
  radA Streptococcus pneumoniae TIGR4

64.912

100

0.649
  radA Streptococcus mitis NCTC 12261

64.912

100

0.649
  radA Streptococcus mitis SK321

64.912

100

0.649
  radA Bacillus subtilis subsp. subtilis str. 168

63.135

99.342

0.627

Multiple sequence alignment