Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   AB3327_RS09800 Genome accession   NZ_CP162863
Coordinates   2196441..2198255 (-) Length   604 a.a.
NCBI ID   WP_368823828.1    Uniprot ID   -
Organism   Lactiplantibacillus pentosus strain PCZ4     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2191441..2203255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3327_RS09775 (AB3327_09775) - 2191486..2192124 (+) 639 WP_105920326.1 copper homeostasis protein CutC -
  AB3327_RS09780 (AB3327_09780) - 2193055..2193957 (-) 903 WP_105920325.1 RluA family pseudouridine synthase -
  AB3327_RS09785 (AB3327_09785) - 2193954..2194757 (-) 804 WP_105920324.1 NAD kinase -
  AB3327_RS09790 (AB3327_09790) - 2194754..2195416 (-) 663 WP_050338376.1 GTP pyrophosphokinase family protein -
  AB3327_RS09795 (AB3327_09795) - 2195710..2196345 (+) 636 WP_101873274.1 DsbA family protein -
  AB3327_RS09800 (AB3327_09800) pepF 2196441..2198255 (-) 1815 WP_368823828.1 oligoendopeptidase F Regulator
  AB3327_RS09805 (AB3327_09805) - 2198327..2199418 (-) 1092 WP_105920322.1 competence protein CoiA -
  AB3327_RS09810 (AB3327_09810) - 2199752..2200483 (-) 732 WP_368823829.1 adaptor protein MecA -
  AB3327_RS09815 (AB3327_09815) spxA 2200619..2201017 (-) 399 WP_050338372.1 transcriptional regulator SpxA -
  AB3327_RS09820 (AB3327_09820) - 2201531..2202274 (-) 744 WP_105920321.1 MBL fold metallo-hydrolase -
  AB3327_RS09825 (AB3327_09825) - 2202416..2202916 (+) 501 WP_050338370.1 hypothetical protein -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 67808.00 Da        Isoelectric Point: 4.9998

>NTDB_id=1027896 AB3327_RS09800 WP_368823828.1 2196441..2198255(-) (pepF) [Lactiplantibacillus pentosus strain PCZ4]
MVATKQLPTRSAVPEELTWDLTPIYATQAAYEADVAQVKAALTAVTALKEHFTDSADTVLAGIQAVLDVYRRLEKVAVYA
SLKSDQDTGNSTNAALDDQASSLTAKVSAATAWFEPAILQLTPDELDTYLDQNVALRDYRHLLDTVRLQKGHVLSENEES
LLAGASDIFGASAKTFGVLNNADFKFPTVKDDDGNPVTLSQGLYGVLLESVHPAVRREAFEALYRVYSQFRRTLASTLAS
QVKVHNFVAQAHHYPDARAAALAANQIPTSVYDALVTSVDDHLDLLHRYVALRKRLLGVDQLHMYDMYTPLAEKPAIKYT
YQQAQTTALQALKILGPDYIKHVKTAFGSRWIDVVENQGKRSGAYSSGMYDTAPYMLLNWQDNIDNLYTLVHEMGHSMHS
YFTTHNQPYQYGDYSIFVAEIASTTNENLLTNYFLETEKDPKMRAYVLNYYLDGFKGTVFRQTQFAEFEQWIHEQDQAGQ
ALTADRLSKYYLQLNQRYYGDAVVSDPQIADEWSRIPHFYYNYYVYQYATGFAAASTLAERISSKQPDAVTDYLGYLKAG
SSAFPIDVMHRAGVDMTKPDYLDAAFKVFAECLDEFEQLVTAAQ

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=1027896 AB3327_RS09800 WP_368823828.1 2196441..2198255(-) (pepF) [Lactiplantibacillus pentosus strain PCZ4]
ATGGTAGCAACCAAACAATTGCCGACCCGTTCAGCCGTTCCTGAAGAACTGACTTGGGATCTGACCCCAATCTACGCTAC
TCAGGCTGCGTATGAAGCGGATGTCGCGCAGGTTAAAGCCGCACTGACAGCTGTGACGGCATTGAAAGAACATTTTACGG
ACTCCGCTGATACCGTATTAGCAGGGATTCAGGCCGTCCTGGATGTTTATCGACGGCTTGAAAAGGTCGCCGTGTACGCA
AGTTTGAAGAGTGACCAGGACACCGGCAACAGCACCAACGCCGCACTTGACGATCAGGCTAGCAGTTTAACGGCCAAGGT
ATCCGCCGCCACTGCCTGGTTTGAACCGGCAATTTTGCAATTAACACCGGATGAACTTGATACTTATTTGGATCAAAACG
TCGCATTACGTGATTACCGGCACTTACTCGATACTGTCCGGCTCCAGAAGGGGCACGTTTTATCAGAAAACGAAGAGTCA
TTACTTGCTGGTGCCAGTGATATTTTTGGCGCGTCAGCGAAGACCTTTGGCGTCTTGAACAATGCTGACTTCAAGTTTCC
AACAGTCAAGGATGATGACGGTAACCCAGTGACCCTTTCGCAGGGGTTATATGGCGTGTTGCTAGAATCAGTGCATCCAG
CCGTTCGTCGCGAAGCGTTTGAAGCGTTATACCGGGTTTATAGCCAGTTTCGGCGGACCCTTGCTTCAACCCTAGCGAGT
CAAGTAAAGGTGCATAACTTTGTCGCTCAGGCGCATCACTATCCGGATGCGCGGGCAGCGGCGTTAGCAGCCAACCAGAT
TCCAACGTCAGTTTATGACGCGCTAGTGACATCGGTTGATGACCATCTGGACTTATTACATCGTTACGTGGCCCTCCGTA
AACGGCTGCTGGGGGTAGACCAATTGCATATGTATGATATGTATACACCATTGGCTGAGAAGCCTGCCATCAAATATACT
TATCAGCAAGCCCAGACCACGGCATTACAGGCGTTAAAGATTTTAGGCCCAGATTACATCAAACACGTCAAGACGGCCTT
TGGTTCACGGTGGATCGATGTGGTTGAAAATCAAGGTAAGCGGAGTGGGGCATATTCATCAGGCATGTATGATACGGCGC
CATATATGCTCTTAAATTGGCAAGACAATATCGATAACTTGTACACGCTCGTCCACGAGATGGGACATAGCATGCACTCA
TACTTCACGACCCATAATCAGCCTTATCAGTATGGTGACTATTCGATCTTTGTGGCTGAAATTGCATCGACGACCAACGA
AAACTTGCTGACTAATTATTTCTTGGAGACTGAAAAGGACCCTAAGATGCGGGCGTATGTTTTGAATTACTATCTCGACG
GCTTCAAGGGGACGGTCTTCCGTCAAACGCAATTTGCTGAATTCGAACAATGGATTCATGAACAAGACCAAGCAGGGCAA
GCTTTGACCGCTGACCGGCTATCGAAATACTACTTGCAACTCAATCAACGCTACTACGGTGACGCGGTGGTCAGTGATCC
GCAGATTGCGGATGAATGGTCCCGAATTCCGCATTTCTACTACAACTATTACGTCTACCAGTATGCGACTGGTTTCGCGG
CGGCTTCGACATTGGCTGAACGGATCAGTAGTAAGCAACCAGACGCAGTTACGGATTATCTGGGGTATCTGAAGGCGGGG
TCTTCGGCGTTCCCAATCGATGTGATGCATCGTGCGGGTGTCGATATGACTAAGCCGGATTACTTGGATGCTGCATTCAA
AGTGTTTGCTGAATGCTTGGATGAATTTGAACAATTGGTGACTGCTGCCCAATAG

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-587)

Oligopeptidase F (Peptidase_M3_N)

(118-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

52.703

98.013

0.517

Multiple sequence alignment