Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   AB4073_RS17330 Genome accession   NZ_CP162643
Coordinates   3677244..3679472 (+) Length   742 a.a.
NCBI ID   WP_368678120.1    Uniprot ID   -
Organism   Acinetobacter lactucae strain 128-92     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3672244..3684472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4073_RS17305 (AB4073_17305) lnt 3672762..3674321 (+) 1560 WP_016144200.1 apolipoprotein N-acyltransferase -
  AB4073_RS17310 (AB4073_17310) - 3674323..3674661 (-) 339 WP_182003113.1 tRNA-binding protein -
  AB4073_RS17315 (AB4073_17315) - 3674807..3675151 (-) 345 WP_016144198.1 hypothetical protein -
  AB4073_RS17320 (AB4073_17320) gspG 3675420..3675869 (-) 450 WP_227513998.1 type II secretion system major pseudopilin GspG -
  AB4073_RS17325 (AB4073_17325) gspF 3675890..3677095 (-) 1206 WP_005065941.1 type II secretion system inner membrane protein GspF -
  AB4073_RS17330 (AB4073_17330) priA 3677244..3679472 (+) 2229 WP_368678120.1 primosomal protein N' Machinery gene
  AB4073_RS17335 (AB4073_17335) - 3679549..3681393 (+) 1845 WP_368678121.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  AB4073_RS17340 (AB4073_17340) - 3681557..3682432 (+) 876 WP_081175424.1 Hsp33 family molecular chaperone HslO -
  AB4073_RS17345 (AB4073_17345) - 3682569..3683180 (+) 612 WP_057104864.1 LysE family translocator -
  AB4073_RS17350 (AB4073_17350) - 3683327..3684283 (+) 957 WP_031947228.1 DnaJ C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 84042.84 Da        Isoelectric Point: 8.6629

>NTDB_id=1027776 AB4073_RS17330 WP_368678120.1 3677244..3679472(+) (priA) [Acinetobacter lactucae strain 128-92]
MTITPKPDSVVYRVRVAVPVHLYDTFDYTLTQAQYERARVGSRVAISFGRQNLIGIITEKVNPNESFTGTFQLKAISELL
DDEPILDEQVLSLLTWSAQYYQFPIGEVMQTALPALLRQGKPMDVLFHLWKITPCDNVEALLKRSVKQQDAYQILKLHPA
GTTENILNLSGVETATLKALQKKGLVDCTLEPHDFSPSPVQLAQMPLTLNEDQKKATQHVVNAQHQYQAFLLDGLTGSGK
TEVYLHIMHEVLKQGKQVLVLVPEIGLTPQTISRFKSRFNCDIALLHSGLNDSKRLQAWQQAQTGKASIILGTRSAIYTP
LPRLGLIILDEEHDLSYKQQEGFRYHARDVALYRGHLQNCPVLLGSATPSIDSYYLVETGKLTALQLNQRAGHALLPKMH
LIDLKIVKKQHGISQPLIEQIKNTLARKEQVLIFLNRRGYAPVLVCESCGWQANCPHCDAHFTLHTQPYSYLHCHHCGTV
HRLPDHCPECQQKSLKTLGAGTAKVEEHLQELFPEHEVIRVDRDSTSRVGSWQKIYDRIHQNKPTILLGTQMLAKGHHFP
HVTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGHVYLQTLRPDHPLLTTLIEKDYRAVAKQTLAERKVAL
LPPYRYAVLIRAESKDRDYTLHFLNEAAEQLRQVAGEIVDIWGPIPAPMERKAGRYRAHMVILSADRARLHFYLRQWWSQ
LVHAPRQHQLRLSIDVDPQEFN

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=1027776 AB4073_RS17330 WP_368678120.1 3677244..3679472(+) (priA) [Acinetobacter lactucae strain 128-92]
ATGACCATAACGCCAAAGCCTGATTCAGTTGTTTATCGTGTGCGTGTAGCCGTACCTGTGCATCTGTACGACACTTTTGA
CTATACACTCACCCAAGCACAATATGAACGGGCCCGCGTAGGCTCACGCGTCGCTATTTCATTTGGACGCCAAAACCTGA
TTGGCATCATTACTGAAAAAGTGAACCCAAATGAATCATTTACAGGCACCTTTCAACTTAAAGCCATTTCTGAACTTTTA
GATGATGAGCCTATTTTAGACGAACAAGTTTTAAGTTTATTGACATGGTCAGCCCAGTATTACCAATTTCCAATTGGTGA
GGTCATGCAAACCGCCCTACCTGCATTATTACGTCAGGGCAAACCGATGGATGTTTTGTTTCATCTTTGGAAAATTACAC
CATGTGATAATGTTGAAGCACTTCTCAAACGTTCTGTTAAGCAACAAGACGCGTATCAAATTTTAAAGTTACACCCTGCC
GGAACTACAGAGAATATTCTTAATTTAAGTGGTGTAGAAACGGCTACGCTTAAAGCACTTCAAAAGAAAGGACTGGTTGA
CTGTACGCTTGAACCACATGACTTTAGCCCATCGCCTGTTCAATTGGCACAAATGCCGCTTACACTCAATGAAGACCAAA
AGAAAGCAACCCAGCACGTCGTAAACGCACAGCATCAATACCAAGCCTTCTTGTTAGATGGTTTAACTGGAAGTGGTAAA
ACTGAAGTTTATCTGCACATCATGCACGAAGTGCTAAAGCAAGGTAAGCAAGTACTGGTGTTAGTCCCAGAAATTGGTCT
AACCCCTCAAACGATTTCTCGTTTTAAATCGCGTTTTAACTGTGATATTGCTCTATTACACTCGGGCTTAAATGACTCTA
AACGTTTACAAGCATGGCAACAGGCTCAGACTGGCAAAGCATCTATTATTTTAGGCACACGCTCAGCCATCTATACGCCA
CTGCCACGTTTGGGCTTAATCATTTTAGATGAAGAACATGACTTGTCTTATAAACAGCAAGAAGGCTTCCGCTACCATGC
ACGTGATGTCGCCCTGTACCGTGGGCACTTACAAAACTGCCCTGTTCTTTTAGGTTCAGCAACTCCAAGCATCGATAGTT
ATTATTTGGTCGAAACTGGCAAGTTAACAGCGCTTCAGCTTAACCAACGTGCAGGCCATGCGCTTTTACCTAAAATGCAT
TTGATTGACCTTAAAATTGTCAAAAAACAGCATGGAATTAGCCAGCCTTTAATAGAACAAATTAAAAACACCTTAGCCAG
AAAAGAACAGGTTTTAATCTTTTTAAACCGTCGTGGCTATGCACCTGTACTGGTGTGTGAAAGCTGTGGCTGGCAAGCAA
ATTGTCCGCATTGTGATGCACATTTTACTTTGCATACTCAGCCTTATTCTTATTTACACTGCCACCACTGCGGCACTGTT
CATCGCTTGCCCGATCACTGCCCTGAATGTCAGCAAAAAAGCCTAAAAACCTTGGGTGCTGGAACAGCTAAGGTTGAAGA
GCACTTACAAGAATTATTTCCCGAACATGAGGTGATTCGGGTTGACCGTGACAGCACGAGTCGTGTCGGAAGCTGGCAAA
AAATCTATGATCGTATTCACCAAAACAAACCAACAATTTTGCTCGGCACTCAAATGTTGGCGAAAGGCCATCATTTTCCA
CACGTCACCTTAGTTGCTATTTTAGATATTGATGCGGGCTTACTGAGTGTCGATATTCGTGCGCCAGAACGTACTGCGCA
GTTAATTGTACAAGTCGCGGGACGTGCAGGCCGTGGCGAACATAAAGGCCATGTTTACTTACAAACCCTAAGACCAGATC
ACCCTTTACTCACCACACTCATCGAAAAAGATTATCGGGCGGTTGCCAAACAGACGCTTGCAGAACGTAAAGTCGCATTG
CTGCCACCTTATCGCTATGCCGTACTGATACGTGCAGAGTCCAAAGACCGTGACTATACCTTACATTTTTTAAATGAAGC
TGCCGAGCAACTTCGTCAAGTGGCTGGTGAAATTGTTGATATTTGGGGACCTATTCCAGCTCCTATGGAGCGTAAAGCGG
GACGTTACCGCGCACATATGGTGATTTTGTCTGCTGACCGTGCTCGCCTACATTTTTACTTAAGACAATGGTGGTCACAA
TTAGTTCATGCGCCGCGCCAGCATCAACTCAGGCTATCAATTGATGTCGATCCGCAAGAATTTAATTAG

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(643-738)

Type III restriction enzyme, res subunit (ResIII)

(208-370)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

97.574

100

0.976

Multiple sequence alignment