Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   AB4073_RS03305 Genome accession   NZ_CP162643
Coordinates   684389..685273 (+) Length   294 a.a.
NCBI ID   WP_368678409.1    Uniprot ID   -
Organism   Acinetobacter lactucae strain 128-92     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 679389..690273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4073_RS03280 (AB4073_03280) - 679700..680947 (-) 1248 WP_016143545.1 YihY family inner membrane protein -
  AB4073_RS03285 (AB4073_03285) wrbA 681309..681917 (+) 609 WP_368678407.1 NAD(P)H:quinone oxidoreductase -
  AB4073_RS03290 (AB4073_03290) - 681964..682539 (-) 576 WP_002119547.1 xanthine phosphoribosyltransferase -
  AB4073_RS03295 (AB4073_03295) - 682611..683324 (-) 714 WP_057104940.1 DUF3108 domain-containing protein -
  AB4073_RS03300 (AB4073_03300) - 683482..684156 (-) 675 WP_368678408.1 hypothetical protein -
  AB4073_RS03305 (AB4073_03305) tonB2 684389..685273 (+) 885 WP_368678409.1 TonB family protein Machinery gene
  AB4073_RS03310 (AB4073_03310) ybeY 685325..685801 (-) 477 WP_125697934.1 rRNA maturation RNase YbeY -
  AB4073_RS03315 (AB4073_03315) - 685811..686899 (-) 1089 WP_002119513.1 PhoH family protein -
  AB4073_RS03320 (AB4073_03320) miaB 686937..688388 (-) 1452 WP_002119558.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33820.49 Da        Isoelectric Point: 9.4831

>NTDB_id=1027757 AB4073_RS03305 WP_368678409.1 684389..685273(+) (tonB2) [Acinetobacter lactucae strain 128-92]
MLNKRSRFIEPFHYWWQDRVFVAATILAILLHIFVLLIQFAMPSPSEQSTKEIAISIRPSNEPVHQADFLAQVDQQGSGA
FREAHRTSSDTLNPMLRDASTGNAELETLQKIQQQRELKFEEKVLMTVLSWQKQADASQRKKELEQLQSQFQAKAAMVAS
LEAQYLQRRQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLRGEVRLMVILNAQGGIRAIRL
LESSGHSILDEAAKSSVRRGAPFGHFDANMKDISELRIVRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=1027757 AB4073_RS03305 WP_368678409.1 684389..685273(+) (tonB2) [Acinetobacter lactucae strain 128-92]
ATGCTGAACAAAAGAAGCCGATTCATAGAGCCTTTTCATTATTGGTGGCAAGACAGAGTCTTTGTTGCTGCAACAATATT
AGCAATTTTGCTGCATATTTTTGTATTGCTCATTCAATTTGCTATGCCCAGCCCGTCAGAGCAATCTACTAAAGAAATTG
CAATTTCAATTCGACCAAGCAATGAGCCAGTTCATCAGGCAGATTTTTTAGCGCAAGTAGACCAGCAGGGTTCAGGTGCA
TTTCGTGAGGCTCACCGGACTTCTAGTGATACTCTAAATCCTATGCTTAGGGATGCTTCAACTGGAAATGCAGAGTTAGA
AACTTTGCAAAAGATTCAGCAACAAAGAGAGCTTAAGTTTGAAGAAAAAGTCTTAATGACAGTTTTGAGTTGGCAAAAAC
AAGCTGATGCAAGTCAAAGGAAAAAAGAATTAGAACAATTACAAAGTCAATTTCAGGCAAAAGCTGCGATGGTTGCCAGC
CTTGAAGCACAATATTTACAACGTAGACAAGATTTCAGCCGCCAGCAAAAAATAAAAACAGTAGACGGAATTCAAGCAAA
GAAAGATGCCTCGGCTGCTTATTTAGATAAGTTCCGTGAAAAAGTAGAGCTTTACGGTAATCGCTATTATCCGGAAGAGG
CCAAACAACAACAGCTAAGAGGTGAAGTGCGTTTAATGGTGATTTTGAATGCTCAAGGCGGAATTCGTGCAATCCGACTG
CTTGAAAGCTCAGGGCATTCAATACTAGATGAAGCAGCTAAGTCTTCAGTACGTCGCGGCGCACCATTTGGACATTTTGA
TGCCAATATGAAAGACATTTCGGAATTACGTATTGTACGTACTTGGCGCTTTGACCCAGCTGAAGCTGAATTTGAGGTTC
ACTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

87.415

100

0.874

Multiple sequence alignment