Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AABK02_RS14435 Genome accession   NZ_AP027889
Coordinates   2943089..2943718 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 2018-06-4CC     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2938089..2948718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABK02_RS14420 (VEE72_27620) helD 2938331..2940385 (-) 2055 WP_063856163.1 DNA helicase IV -
  AABK02_RS14425 (VEE72_27630) yccF 2940508..2940954 (+) 447 WP_001261235.1 YccF domain-containing protein -
  AABK02_RS14430 (VEE72_27640) yccS 2940964..2943126 (+) 2163 WP_000875061.1 YccS family putative transporter -
  AABK02_RS14435 (VEE72_27650) sxy/tfoX 2943089..2943718 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AABK02_RS14440 (VEE72_27660) sulA 2943937..2944446 (+) 510 WP_000288706.1 SOS-induced cell division inhibitor SulA -
  AABK02_RS14445 (VEE72_27680) ompA 2944803..2945855 (+) 1053 WP_032202393.1 porin OmpA -
  AABK02_RS14450 (VEE72_27690) matP 2945931..2946383 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  AABK02_RS14455 (VEE72_27700) ycbZ 2946569..2948329 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=102775 AABK02_RS14435 WP_000839153.1 2943089..2943718(-) (sxy/tfoX) [Escherichia coli strain 2018-06-4CC]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=102775 AABK02_RS14435 WP_000839153.1 2943089..2943718(-) (sxy/tfoX) [Escherichia coli strain 2018-06-4CC]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGATGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment