Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   AB3Z07_RS18555 Genome accession   NZ_CP162630
Coordinates   3748797..3751178 (-) Length   793 a.a.
NCBI ID   WP_251683797.1    Uniprot ID   -
Organism   Metabacillus halosaccharovorans strain Hao 2024     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3743797..3756178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3Z07_RS18530 (AB3Z07_18530) alaS 3743831..3746470 (-) 2640 WP_368657443.1 alanine--tRNA ligase -
  AB3Z07_RS18535 (AB3Z07_18535) - 3746791..3747852 (-) 1062 WP_251683801.1 AI-2E family transporter -
  AB3Z07_RS18540 (AB3Z07_18540) - 3747942..3748073 (-) 132 WP_078432422.1 YrzQ family protein -
  AB3Z07_RS18545 (AB3Z07_18545) - 3748087..3748278 (-) 192 WP_026558652.1 hypothetical protein -
  AB3Z07_RS18550 (AB3Z07_18550) - 3748294..3748776 (-) 483 WP_251683799.1 PRC-barrel domain-containing protein -
  AB3Z07_RS18555 (AB3Z07_18555) recD2 3748797..3751178 (-) 2382 WP_251683797.1 ATP-dependent RecD-like DNA helicase Machinery gene
  AB3Z07_RS18560 (AB3Z07_18560) - 3751207..3751863 (-) 657 WP_251683795.1 tetratricopeptide repeat protein -
  AB3Z07_RS18565 (AB3Z07_18565) mnmA 3751992..3753104 (-) 1113 WP_251683794.1 tRNA 2-thiouridine(34) synthase MnmA -
  AB3Z07_RS18570 (AB3Z07_18570) - 3753127..3754266 (-) 1140 WP_251683792.1 cysteine desulfurase family protein -
  AB3Z07_RS18575 (AB3Z07_18575) - 3754304..3754723 (-) 420 WP_026558646.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 793 a.a.        Molecular weight: 89214.16 Da        Isoelectric Point: 4.9827

>NTDB_id=1027681 AB3Z07_RS18555 WP_251683797.1 3748797..3751178(-) (recD2) [Metabacillus halosaccharovorans strain Hao 2024]
MQESADLFSENERYVKGLVKVVIFHNDQNLYSVLKVRVHETSENIEDKEITVTGYFPLLHEDDLYTFYGTLTNHPKFGLQ
FQTEHFRKEIPQTKEGIIQYLSSDLFKGIGKKTAEAIVEKLGESAISKILQNPSILDDIPKVNKEKAKQLVDALVSHQGL
EQIMIALNQFGFGPQLAMKIYQTYKDETLTIVQNNPYQLVQDIEGIGFVRADELGKQLGISGKDSERIKAACHYIIEQLC
VQDGHVYITLEQLIVKAKELLDHTKQAIIHETDIATEIIALGEEGKLIVEEERVYLPSLYFAEQGLVKNVKKVLEQTEYD
ELFPESEFLLSLGKLEERMKVQYAPSQKDAIQKALMSPMLLLTGGPGTGKTTVIKGIVELYSDLHGCSLEPKDYKKEEPF
PILLVAPTGRAAKRMSEATGMPAVTIHRLLKWNGADGFEHDEDNPISGKLLIVDEVSMVDIWIANQLFKALPKEIQVIMV
GDEDQLPSVGPGQVLRDLLSSKMIPTVQLTDIYRQAEGSSIIELAHEMKTGNLPGNIAKPTSDRSFIRCSQAQMKEVIER
IIQSAINKGYTAKDIQVLAPMYRGAAGIDQLNKLLQELFNPKSPGKREMKFGEVVYRNGDKVLQLVNQPDSNVFNGDIGE
IVSIFYAKENTEKEDMIVISFDGNEVTYTKQDFNQFTHAFCCSIHKSQGSEFPIVVLPIVKGYYRMLRRNLIYTAVTRSK
RSLVICGELEALQWGVSNNDSSDRQTSLRQKLSGMHSDSEMDELQKELPFPVSDANIGMENLSPYDFMEPSET

Nucleotide


Download         Length: 2382 bp        

>NTDB_id=1027681 AB3Z07_RS18555 WP_251683797.1 3748797..3751178(-) (recD2) [Metabacillus halosaccharovorans strain Hao 2024]
ATGCAGGAGAGTGCCGATTTATTTAGTGAAAATGAACGTTATGTAAAAGGGCTTGTTAAAGTTGTGATCTTTCACAATGA
TCAAAATTTATATTCTGTTTTAAAAGTAAGAGTTCATGAAACAAGTGAAAACATTGAAGATAAAGAAATAACGGTTACAG
GTTACTTTCCACTCCTGCATGAAGATGATCTTTATACGTTTTATGGCACACTAACAAATCATCCTAAATTCGGTCTGCAA
TTTCAAACCGAGCATTTTCGTAAAGAAATACCTCAAACGAAAGAAGGAATTATTCAATATCTTTCAAGTGATCTTTTTAA
GGGTATTGGGAAAAAAACAGCAGAGGCGATCGTTGAGAAATTAGGGGAATCTGCCATCTCCAAAATCCTGCAAAACCCTT
CGATTTTAGATGATATTCCCAAGGTAAATAAAGAAAAAGCAAAACAATTAGTCGATGCTTTAGTTTCTCATCAGGGGCTT
GAACAAATTATGATCGCATTAAATCAGTTTGGTTTTGGACCTCAATTAGCCATGAAGATTTATCAAACATATAAAGATGA
AACATTAACAATTGTTCAAAATAACCCTTATCAGCTTGTACAGGATATTGAGGGGATTGGTTTTGTAAGGGCCGATGAGC
TCGGTAAACAGCTGGGTATATCAGGAAAAGATTCTGAAAGAATAAAAGCAGCGTGTCATTACATTATTGAACAATTATGT
GTACAAGATGGTCATGTTTACATAACACTTGAGCAGCTAATAGTAAAAGCAAAGGAATTGCTTGATCATACGAAGCAAGC
CATTATTCATGAGACAGACATTGCGACGGAAATTATTGCATTAGGAGAAGAAGGCAAGCTGATTGTAGAGGAAGAACGGG
TATATCTACCCTCTCTTTATTTTGCTGAGCAAGGATTAGTCAAGAACGTTAAAAAAGTTCTGGAGCAAACCGAATATGAT
GAATTGTTTCCTGAGTCTGAGTTTTTATTATCACTCGGTAAACTGGAAGAAAGAATGAAGGTTCAATATGCACCTTCTCA
GAAGGATGCTATACAAAAAGCATTAATGTCACCAATGCTTTTATTGACTGGAGGACCTGGAACAGGAAAAACAACTGTTA
TTAAAGGGATTGTTGAACTATATTCTGATTTGCATGGCTGTTCTCTTGAACCAAAAGACTATAAAAAAGAAGAACCATTT
CCAATCTTGCTTGTTGCTCCAACGGGTCGAGCTGCTAAACGAATGAGTGAAGCGACAGGTATGCCTGCAGTTACGATTCA
CCGCTTGTTGAAATGGAATGGAGCAGACGGTTTTGAACATGATGAAGATAATCCAATATCAGGAAAACTGCTCATTGTTG
ATGAGGTTTCAATGGTTGACATATGGATTGCCAACCAATTGTTCAAAGCGCTGCCTAAGGAAATACAAGTTATCATGGTT
GGAGACGAAGATCAGCTTCCATCGGTAGGACCTGGACAAGTGCTGCGAGATTTATTGTCTTCTAAAATGATTCCAACTGT
TCAGTTAACAGATATCTATCGTCAAGCTGAAGGCTCATCCATTATTGAACTCGCCCATGAAATGAAAACAGGAAATTTAC
CGGGAAATATTGCCAAACCAACATCAGATCGTTCCTTTATTCGCTGTTCACAAGCACAAATGAAGGAAGTAATTGAAAGA
ATTATTCAAAGTGCAATAAATAAAGGCTATACCGCAAAGGATATTCAAGTATTAGCACCTATGTACCGAGGCGCAGCAGG
TATTGACCAACTGAATAAATTACTTCAAGAACTGTTTAATCCTAAATCTCCTGGAAAACGAGAAATGAAATTTGGCGAGG
TTGTTTATCGTAATGGAGACAAAGTTCTTCAACTGGTCAATCAACCAGATAGCAATGTATTTAATGGCGATATTGGAGAA
ATTGTTTCAATCTTTTATGCAAAAGAAAATACAGAAAAAGAGGATATGATTGTCATTTCCTTCGATGGAAATGAAGTTAC
CTACACCAAGCAAGATTTCAACCAATTTACACATGCGTTTTGCTGCTCCATACATAAGTCTCAGGGAAGCGAATTTCCAA
TTGTTGTGTTACCTATTGTAAAAGGGTATTACCGGATGCTAAGGCGAAATTTAATTTATACGGCAGTAACCAGGAGTAAA
CGATCGCTTGTGATATGTGGTGAGTTAGAAGCTCTTCAATGGGGTGTATCAAATAATGACAGTTCAGATCGGCAGACAAG
TTTAAGGCAAAAATTAAGCGGCATGCATTCTGACTCCGAAATGGATGAACTTCAAAAGGAATTGCCTTTTCCCGTTAGTG
ATGCAAATATTGGCATGGAAAACCTTTCACCGTATGACTTCATGGAGCCAAGTGAAACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(157-247)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(678-726)

AAA domain (AAA_30)

(343-550)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-659)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

68.766

100

0.689

Multiple sequence alignment