Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   AB3Z07_RS14215 Genome accession   NZ_CP162630
Coordinates   2930689..2931393 (-) Length   234 a.a.
NCBI ID   WP_368657129.1    Uniprot ID   -
Organism   Metabacillus halosaccharovorans strain Hao 2024     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2925689..2936393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3Z07_RS14195 (AB3Z07_14195) - 2925858..2926919 (-) 1062 WP_251685626.1 alkene reductase -
  AB3Z07_RS14200 (AB3Z07_14200) - 2927172..2927921 (-) 750 WP_251685627.1 SDR family oxidoreductase -
  AB3Z07_RS14205 (AB3Z07_14205) - 2928078..2928653 (-) 576 WP_251685628.1 TetR/AcrR family transcriptional regulator -
  AB3Z07_RS14210 (AB3Z07_14210) - 2929299..2930687 (-) 1389 WP_251685629.1 sensor histidine kinase KdpD -
  AB3Z07_RS14215 (AB3Z07_14215) scnR 2930689..2931393 (-) 705 WP_368657129.1 response regulator transcription factor Regulator
  AB3Z07_RS14220 (AB3Z07_14220) - 2931544..2932299 (+) 756 WP_251685630.1 ABC transporter ATP-binding protein -
  AB3Z07_RS14225 (AB3Z07_14225) - 2932296..2933018 (+) 723 WP_251685631.1 ABC transporter permease -
  AB3Z07_RS14230 (AB3Z07_14230) - 2933015..2933785 (+) 771 WP_368657130.1 ABC transporter permease -
  AB3Z07_RS14235 (AB3Z07_14235) - 2933790..2934074 (+) 285 WP_251685633.1 hypothetical protein -
  AB3Z07_RS14240 (AB3Z07_14240) - 2934294..2934494 (-) 201 WP_251685587.1 hypothetical protein -
  AB3Z07_RS14245 (AB3Z07_14245) - 2934703..2934981 (+) 279 WP_251685634.1 hypothetical protein -
  AB3Z07_RS14250 (AB3Z07_14250) - 2935256..2936143 (-) 888 WP_368657131.1 hypothetical protein -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26538.56 Da        Isoelectric Point: 4.7799

>NTDB_id=1027670 AB3Z07_RS14215 WP_368657129.1 2930689..2931393(-) (scnR) [Metabacillus halosaccharovorans strain Hao 2024]
MDLNYLKQKRILLVDDEPELLDMVISILCEDGFVDIHTAKNVEQAVETAEKYPPELAVLDVMLPDGDGFSLLEKLKKKAE
YPILFLTARGEDEDRLKGLGLGADDYIVKPFLPKELIYRITAILRRSYKDDHPLVKLQDSEIDFERAEIIKNGERITLTA
KEHALLLALYRNAGRIVTLDALCEAAWGDNPFGYENSLMAHIRRIRQKTENNPSQPESLITVKGLGYKLITGEN

Nucleotide


Download         Length: 705 bp        

>NTDB_id=1027670 AB3Z07_RS14215 WP_368657129.1 2930689..2931393(-) (scnR) [Metabacillus halosaccharovorans strain Hao 2024]
ATGGATTTAAATTATTTAAAACAAAAACGCATCCTGCTTGTTGATGATGAGCCGGAATTATTAGATATGGTGATTTCAAT
TCTGTGTGAAGATGGATTTGTGGACATACACACTGCAAAAAACGTCGAACAAGCAGTTGAAACAGCGGAGAAATATCCAC
CAGAACTAGCTGTTCTTGACGTTATGCTACCTGATGGTGATGGCTTTTCCTTGTTGGAGAAACTGAAGAAAAAAGCGGAA
TATCCAATATTATTTTTAACAGCTCGTGGCGAGGATGAAGACAGGTTGAAAGGCCTCGGTCTCGGAGCGGATGATTACAT
AGTTAAACCATTCTTGCCCAAAGAATTAATTTATCGAATTACAGCAATTCTGCGTAGAAGCTATAAGGATGATCATCCTC
TTGTCAAATTACAAGATAGCGAAATTGACTTTGAACGTGCTGAAATCATAAAAAATGGAGAACGCATTACATTGACCGCA
AAGGAACACGCATTGCTCTTGGCTCTTTATCGTAATGCGGGGCGTATTGTAACACTTGACGCTTTATGTGAAGCTGCGTG
GGGGGACAATCCCTTCGGATATGAAAACTCGCTAATGGCGCATATTCGCCGTATTCGTCAAAAGACTGAGAACAATCCGT
CTCAACCGGAATCACTTATTACAGTTAAGGGACTCGGATATAAACTGATTACGGGGGAAAATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(11-120)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(153-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

49.78

97.009

0.483

Multiple sequence alignment