Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   AB3Z07_RS03465 Genome accession   NZ_CP162630
Coordinates   702416..703369 (+) Length   317 a.a.
NCBI ID   WP_078435472.1    Uniprot ID   -
Organism   Metabacillus halosaccharovorans strain Hao 2024     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 697416..708369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3Z07_RS03445 (AB3Z07_03445) - 698329..699219 (+) 891 WP_368659494.1 carbohydrate ABC transporter permease -
  AB3Z07_RS03450 (AB3Z07_03450) - 699212..700036 (+) 825 WP_078435469.1 carbohydrate ABC transporter permease -
  AB3Z07_RS03455 (AB3Z07_03455) mgrA 700140..701132 (+) 993 WP_368658514.1 L-glyceraldehyde 3-phosphate reductase -
  AB3Z07_RS03460 (AB3Z07_03460) - 701682..702071 (+) 390 WP_368658515.1 ribbon-helix-helix protein, CopG family -
  AB3Z07_RS03465 (AB3Z07_03465) ceuB 702416..703369 (+) 954 WP_078435472.1 ABC transporter permease Machinery gene
  AB3Z07_RS03470 (AB3Z07_03470) - 703359..704312 (+) 954 WP_251685185.1 iron chelate uptake ABC transporter family permease subunit -
  AB3Z07_RS03475 (AB3Z07_03475) - 704309..705076 (+) 768 WP_368658516.1 ABC transporter ATP-binding protein -
  AB3Z07_RS03480 (AB3Z07_03480) - 705275..706318 (+) 1044 WP_368658517.1 siderophore ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34612.61 Da        Isoelectric Point: 8.6806

>NTDB_id=1027653 AB3Z07_RS03465 WP_078435472.1 702416..703369(+) (ceuB) [Metabacillus halosaccharovorans strain Hao 2024]
MRLWMLGIVAIVLSFISLFIGAIDITPLDLLDWESDETQIFLISRVPRLIAIILAGAGMSIAGLIMQSLSRNKFVSPTTA
GTLDAAKLGILISMLFFTNVTYTQQVIFSFAFALAGTFVFMQILDRIKFKDVIFVPLIGIMYGNILSSITTFLGYEADLL
QNISSWLMGSFTLVIAGRYELLYVSIPAVILAYLYANKFTVAGMGEDFAKNLGLSYKLVLNTGLILVAIISTTVVLTVGV
IPFLGLIVPNIVSLYLGDNLRKTIPHTAVLGVVFLLICDILGRIIIHPYEIPVNVTVAVIGSAIFLTMLLRGRAYAK

Nucleotide


Download         Length: 954 bp        

>NTDB_id=1027653 AB3Z07_RS03465 WP_078435472.1 702416..703369(+) (ceuB) [Metabacillus halosaccharovorans strain Hao 2024]
ATGAGATTATGGATGTTAGGAATTGTAGCTATCGTCCTGTCATTTATCTCGCTATTTATCGGAGCAATTGATATAACACC
GCTTGATTTACTAGATTGGGAATCAGATGAAACACAAATTTTCCTTATAAGTCGGGTACCACGATTAATTGCCATTATAT
TAGCGGGGGCAGGGATGAGTATTGCCGGTTTAATTATGCAATCTTTAAGCCGAAATAAGTTTGTTTCACCAACAACTGCC
GGGACATTGGATGCAGCAAAACTAGGTATTTTAATTTCAATGTTATTTTTTACGAATGTAACTTATACACAGCAAGTGAT
CTTTAGTTTTGCATTTGCTTTGGCAGGAACATTCGTATTTATGCAAATATTGGATCGTATTAAATTTAAAGATGTCATTT
TTGTCCCATTGATTGGAATTATGTATGGAAATATTTTGTCTTCCATTACAACATTCTTAGGATATGAAGCTGATCTTTTG
CAAAATATCTCTTCATGGCTTATGGGCAGTTTCACGTTAGTTATTGCCGGCCGATATGAGCTTTTATATGTTAGTATTCC
AGCTGTTATTCTAGCGTATCTTTATGCAAATAAGTTCACAGTCGCAGGAATGGGAGAAGATTTTGCGAAGAATCTGGGTT
TAAGTTATAAGCTGGTGCTTAATACTGGCTTAATCCTTGTTGCAATAATTTCGACAACAGTAGTCCTCACAGTGGGTGTC
ATTCCGTTCTTAGGGCTGATTGTGCCAAATATTGTTTCTCTTTACTTAGGGGATAACTTACGTAAAACGATTCCACATAC
AGCTGTGCTAGGGGTTGTTTTCTTATTAATATGTGACATTCTAGGACGTATCATTATTCATCCTTATGAAATTCCAGTTA
ATGTAACTGTGGCAGTAATAGGCAGTGCGATCTTCTTAACGATGTTACTTAGGGGGAGAGCATATGCGAAATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.984

98.107

0.539

Multiple sequence alignment