Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   AB3U43_RS29885 Genome accession   NZ_CP162629
Coordinates   4946210..4947559 (-) Length   449 a.a.
NCBI ID   WP_086392936.1    Uniprot ID   A0A9X6JHN2
Organism   Bacillus cereus strain L6     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4941210..4952559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3U43_RS29850 (AB3U43_29850) - 4941376..4942071 (-) 696 WP_000466507.1 hypothetical protein -
  AB3U43_RS29855 (AB3U43_29855) - 4942058..4942846 (-) 789 Protein_4976 hypothetical protein -
  AB3U43_RS29860 (AB3U43_29860) - 4942874..4943443 (-) 570 WP_061664408.1 hypothetical protein -
  AB3U43_RS29865 (AB3U43_29865) - 4943561..4944034 (-) 474 WP_086392935.1 hypothetical protein -
  AB3U43_RS29870 (AB3U43_29870) raiA 4944317..4944859 (-) 543 WP_000671186.1 ribosome-associated translation inhibitor RaiA -
  AB3U43_RS29875 (AB3U43_29875) cspC 4945182..4945379 (-) 198 WP_001990088.1 cold shock protein CspC -
  AB3U43_RS29880 (AB3U43_29880) - 4945506..4946210 (-) 705 WP_033685746.1 ComF family protein -
  AB3U43_RS29885 (AB3U43_29885) comFA 4946210..4947559 (-) 1350 WP_086392936.1 ATP-dependent helicase ComFA Machinery gene
  AB3U43_RS29890 (AB3U43_29890) - 4947687..4949114 (-) 1428 WP_044796200.1 NlpC/P60 family protein -
  AB3U43_RS29895 (AB3U43_29895) - 4949263..4949577 (-) 315 WP_000400857.1 helix-turn-helix domain-containing protein -
  AB3U43_RS29900 (AB3U43_29900) - 4949749..4950591 (-) 843 WP_000684725.1 DegV family protein -
  AB3U43_RS29905 (AB3U43_29905) - 4950828..4951463 (+) 636 WP_086392937.1 YigZ family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 51068.97 Da        Isoelectric Point: 9.9712

>NTDB_id=1027641 AB3U43_RS29885 WP_086392936.1 4946210..4947559(-) (comFA) [Bacillus cereus strain L6]
MLAGKQLLLEELSSDLQRELNDLKKKGEIVCVQGVKKKNSKYMCQRCGNVDRRLFASFLCKRCSKVCTYCRKCITMGRVS
ECAVLVRGIAERKREKNSNLLQWNGTLSTGQNLAAQGVIEAIKQKESFFIWAVCGAGKTEMLFYGINEALQKGERVCIAT
PRTDVVLELAPRLQEVFPYIKVAALYGGSVDKEKDAVLVVVTTHQLLRYYRAFHVMVVDEIDAFPYCADQMLQYAVKQAM
KEKAARIYLTATPDETWKRKLKQGKQKGVIVSGRYHRHPLPVPLFCWCGNWKKNLIHKRIPRVLLQWLQTYLNKKFPIFL
FVPHVRYIEEISLLLKPLNNRIEGVHAEDPGRKEKVAAFRKGEIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSFEAPYGEVIYFHYGKTEAMVRAKKHIQGMNKNAKEQGLID

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=1027641 AB3U43_RS29885 WP_086392936.1 4946210..4947559(-) (comFA) [Bacillus cereus strain L6]
ATGCTAGCGGGGAAACAGTTGCTATTAGAAGAACTTTCTTCAGATTTACAGAGGGAATTAAACGATTTGAAAAAGAAGGG
AGAGATCGTATGTGTACAAGGTGTAAAAAAGAAGAATTCTAAATATATGTGCCAACGCTGTGGAAATGTAGATCGGCGGC
TATTTGCATCGTTTTTATGTAAAAGGTGCAGTAAAGTGTGCACATATTGCCGGAAGTGTATAACGATGGGGAGAGTAAGT
GAATGTGCTGTACTTGTTCGCGGGATTGCTGAAAGAAAGAGAGAAAAGAATTCAAATTTGTTACAGTGGAACGGGACGTT
GTCTACTGGCCAGAATTTGGCGGCGCAAGGAGTTATAGAGGCTATTAAGCAAAAAGAATCATTTTTTATTTGGGCTGTAT
GCGGAGCTGGGAAAACAGAGATGTTGTTTTACGGTATTAACGAAGCGCTTCAAAAAGGAGAAAGAGTTTGTATCGCAACG
CCAAGAACGGATGTTGTTTTGGAATTAGCACCGAGATTACAAGAAGTATTTCCATATATAAAGGTAGCGGCTTTATATGG
AGGGAGTGTAGATAAAGAAAAAGATGCAGTACTAGTCGTTGTGACTACGCATCAATTATTACGTTATTATAGGGCGTTTC
ATGTCATGGTTGTAGATGAGATAGATGCTTTTCCATATTGTGCAGATCAAATGTTACAGTACGCGGTAAAGCAAGCGATG
AAAGAAAAAGCGGCGCGTATTTATTTAACTGCGACTCCAGATGAAACGTGGAAGCGAAAACTTAAACAAGGTAAACAAAA
AGGTGTTATTGTTTCTGGACGATATCACCGTCATCCGTTGCCAGTTCCTTTATTTTGTTGGTGCGGGAATTGGAAAAAAA
ACCTCATTCATAAAAGAATTCCTCGAGTTTTACTACAGTGGTTACAAACATACTTAAATAAAAAATTCCCTATTTTTTTA
TTCGTCCCCCATGTGCGATATATAGAAGAAATAAGCTTGTTGTTAAAACCATTAAACAATCGAATTGAAGGTGTACATGC
AGAAGATCCAGGGAGAAAAGAAAAAGTAGCGGCTTTCAGAAAGGGAGAAATCCCATTATTAGTTACAACGACAATTTTAG
AGCGAGGCGTAACGGTGAAAAATTTGCAAGTTGCAGTTTTAGGGGCGGAAGAAGAAATATTTTCAGAAAGTGCGCTCGTA
CAAATCGCGGGCCGAGCAGGGCGGAGCTTTGAAGCACCGTATGGAGAAGTCATTTATTTTCACTATGGCAAGACAGAGGC
GATGGTGCGCGCGAAAAAACATATTCAAGGTATGAATAAAAATGCGAAAGAACAAGGATTAATCGATTAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(313-408)

DEAD/DEAH box helicase (DEAD)

(117-256)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

51.357

98.441

0.506
  comFA Latilactobacillus sakei subsp. sakei 23K

41.439

89.755

0.372

Multiple sequence alignment