Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   AB3U43_RS25575 Genome accession   NZ_CP162629
Coordinates   4142585..4143331 (-) Length   248 a.a.
NCBI ID   WP_000487013.1    Uniprot ID   A0A9W5QDK4
Organism   Bacillus cereus strain L6     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 4137585..4148331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3U43_RS25560 (AB3U43_25560) dnaG 4138346..4140142 (-) 1797 WP_086391737.1 DNA primase -
  AB3U43_RS25565 (AB3U43_25565) - 4141003..4141815 (-) 813 WP_000368935.1 pyruvate, water dikinase regulatory protein -
  AB3U43_RS25570 (AB3U43_25570) - 4141845..4142477 (-) 633 WP_000583756.1 helix-turn-helix transcriptional regulator -
  AB3U43_RS25575 (AB3U43_25575) recO 4142585..4143331 (-) 747 WP_000487013.1 DNA repair protein RecO Machinery gene
  AB3U43_RS25580 (AB3U43_25580) - 4143365..4143508 (-) 144 WP_000883924.1 YqzL family protein -
  AB3U43_RS25585 (AB3U43_25585) era 4143685..4144590 (-) 906 WP_001080237.1 GTPase Era -
  AB3U43_RS25590 (AB3U43_25590) - 4144583..4144981 (-) 399 WP_001086286.1 cytidine deaminase -
  AB3U43_RS25595 (AB3U43_25595) - 4145081..4145434 (-) 354 WP_000715469.1 diacylglycerol kinase family protein -
  AB3U43_RS25600 (AB3U43_25600) ybeY 4145431..4145901 (-) 471 WP_000054679.1 rRNA maturation RNase YbeY -
  AB3U43_RS25605 (AB3U43_25605) - 4145898..4148042 (-) 2145 WP_000091514.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28609.20 Da        Isoelectric Point: 8.0488

>NTDB_id=1027631 AB3U43_RS25575 WP_000487013.1 4142585..4143331(-) (recO) [Bacillus cereus strain L6]
MFQKVEGIVIRTTDYGETNKIVTIFSRELGKVSAMARGAKKPKSRLASVSQLMTHGQFLIQMGSGLGTLQQGEIISTMKE
IREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLHYMCEGVDPEVLSLIYQTKMLPVLGMRPYFDTCAICHQETD
FVAFSVREGGFLCSRHAEQDPYRIPVGEAVHKLLRLFFHFDLHRLGNVSVKDSTKKQMRLVLNTYYDEYCGIYLKSRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=1027631 AB3U43_RS25575 WP_000487013.1 4142585..4143331(-) (recO) [Bacillus cereus strain L6]
ATGTTTCAAAAAGTTGAGGGCATCGTTATCCGTACGACAGATTACGGAGAAACGAACAAGATTGTTACAATATTCTCAAG
AGAACTTGGTAAGGTAAGTGCAATGGCAAGAGGGGCAAAAAAACCGAAAAGCCGATTAGCATCTGTGTCGCAATTAATGA
CACATGGCCAGTTTCTTATTCAAATGGGATCTGGGCTTGGAACATTGCAACAAGGCGAGATTATTTCAACTATGAAAGAA
ATTCGCGAGGATATATTTTTAACTGCTTATGCATCATTTATTGTTGAATTAACTGATAAAGCAACAGAAGATAAAAAACA
TAATCCGTATTTATTTGAAATGTTATATCAAACGTTGCATTATATGTGTGAGGGTGTTGATCCAGAAGTATTATCATTAA
TTTATCAAACGAAAATGCTTCCGGTATTAGGGATGCGCCCGTACTTTGATACATGTGCGATTTGTCATCAAGAAACAGAC
TTTGTCGCCTTCTCCGTTAGGGAAGGCGGTTTTCTGTGCTCACGTCATGCGGAGCAAGACCCGTATCGTATACCGGTAGG
AGAAGCTGTTCATAAATTATTACGTCTTTTCTTCCATTTCGATTTACATAGGCTCGGAAATGTATCGGTAAAGGATAGCA
CAAAAAAACAAATGCGTTTAGTATTGAATACATATTATGATGAATATTGCGGAATTTATTTGAAATCAAGACGTTTTTTA
GAACAACTTGATAAGTTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.466

99.597

0.552

Multiple sequence alignment