Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   AB3U43_RS12140 Genome accession   NZ_CP162629
Coordinates   1500596..1501198 (-) Length   200 a.a.
NCBI ID   WP_000155598.1    Uniprot ID   A0A9W5VGG2
Organism   Bacillus cereus strain L6     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1495596..1506198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3U43_RS12120 (AB3U43_12120) dnaD 1495912..1496619 (+) 708 WP_000728552.1 DNA replication protein DnaD -
  AB3U43_RS12125 (AB3U43_12125) nth 1496635..1497282 (+) 648 WP_000933034.1 endonuclease III -
  AB3U43_RS12130 (AB3U43_12130) - 1497286..1497804 (+) 519 WP_368661401.1 YpoC family protein -
  AB3U43_RS12135 (AB3U43_12135) - 1497830..1500529 (-) 2700 WP_001283099.1 PBP1A family penicillin-binding protein -
  AB3U43_RS12140 (AB3U43_12140) recU 1500596..1501198 (-) 603 WP_000155598.1 Holliday junction resolvase RecU Machinery gene
  AB3U43_RS12145 (AB3U43_12145) - 1501302..1502327 (+) 1026 WP_086392157.1 DUF2515 domain-containing protein -
  AB3U43_RS12150 (AB3U43_12150) - 1502479..1502658 (-) 180 WP_001987054.1 hypothetical protein -
  AB3U43_RS12155 (AB3U43_12155) - 1502744..1502986 (+) 243 WP_001252036.1 hypothetical protein -
  AB3U43_RS12160 (AB3U43_12160) - 1503002..1503352 (+) 351 WP_098432024.1 YppE family protein -
  AB3U43_RS12165 (AB3U43_12165) - 1503379..1503570 (-) 192 WP_000242652.1 YppF family protein -
  AB3U43_RS12170 (AB3U43_12170) - 1503748..1504245 (+) 498 WP_086392158.1 YppG family protein -
  AB3U43_RS12175 (AB3U43_12175) - 1504401..1504829 (+) 429 WP_000546270.1 CotD family spore coat protein -
  AB3U43_RS12180 (AB3U43_12180) - 1504886..1505440 (+) 555 WP_000862912.1 DUF1273 domain-containing protein -
  AB3U43_RS12185 (AB3U43_12185) gpsB 1505539..1505874 (+) 336 WP_000622431.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23355.63 Da        Isoelectric Point: 9.4336

>NTDB_id=1027619 AB3U43_RS12140 WP_000155598.1 1500596..1501198(-) (recU) [Bacillus cereus strain L6]
MTIRYPNGKRYNQASQPQKTPIKTHTYSNRGMSLEEELNETNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVVAHNGIAFVIIKFTLFDEFYLLDAKHIIAFWNRQ
NTGGRKSITKEEIEEHGSLLSCGYHPRIDYIRVLDMVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=1027619 AB3U43_RS12140 WP_000155598.1 1500596..1501198(-) (recU) [Bacillus cereus strain L6]
ATGACCATTCGTTACCCAAATGGAAAAAGGTATAATCAAGCTTCACAACCTCAAAAAACACCTATAAAAACACATACTTA
TAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATCAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAGCCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACAACAGATTACAACGGTGTATACAAAGGGAAATACATCGATTTTGAAGCAAAGGAAACCAAAAATAA
AACTAGTTTCCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTGGTTGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAATTTTATTTACTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGCAAGTCGATTACGAAAGAAGAAATAGAAGAGCATGGATCCTTATTATCATGCGGTTATCACCCTCG
GATTGACTATATCCGTGTACTAGACATGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

63.5

100

0.635

Multiple sequence alignment