Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   AB3U43_RS10820 Genome accession   NZ_CP162629
Coordinates   1258144..1258467 (-) Length   107 a.a.
NCBI ID   WP_000578885.1    Uniprot ID   A0A9W5VG71
Organism   Bacillus cereus strain L6     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1253144..1263467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3U43_RS10795 (AB3U43_10795) - 1253473..1254759 (+) 1287 WP_086392122.1 D-alanyl-D-alanine carboxypeptidase family protein -
  AB3U43_RS10800 (AB3U43_10800) sipW 1254950..1255519 (+) 570 WP_000767793.1 signal peptidase I SipW -
  AB3U43_RS10805 (AB3U43_10805) - 1255580..1256167 (+) 588 WP_000172854.1 CalY family protein -
  AB3U43_RS10810 (AB3U43_10810) - 1256302..1257090 (+) 789 WP_140159518.1 DUF4047 domain-containing protein -
  AB3U43_RS10815 (AB3U43_10815) calY 1257478..1258071 (+) 594 WP_000053713.1 biofilm matrix protein CalY -
  AB3U43_RS10820 (AB3U43_10820) sinR 1258144..1258467 (-) 324 WP_000578885.1 helix-turn-helix domain-containing protein Regulator
  AB3U43_RS10825 (AB3U43_10825) - 1258547..1258681 (-) 135 WP_000276219.1 anti-repressor SinI family protein -
  AB3U43_RS10830 (AB3U43_10830) inhA1 1259024..1261414 (+) 2391 WP_001035944.1 M6 family metalloprotease immune inhibitor InhA1 -
  AB3U43_RS10835 (AB3U43_10835) - 1261586..1262953 (+) 1368 WP_000028383.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12349.19 Da        Isoelectric Point: 9.6244

>NTDB_id=1027617 AB3U43_RS10820 WP_000578885.1 1258144..1258467(-) (sinR) [Bacillus cereus strain L6]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKETNLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=1027617 AB3U43_RS10820 WP_000578885.1 1258144..1258467(-) (sinR) [Bacillus cereus strain L6]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGGATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAACTAACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAGTGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692

Multiple sequence alignment