Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   AB4027_RS08290 Genome accession   NZ_CP162615
Coordinates   1749514..1751325 (-) Length   603 a.a.
NCBI ID   WP_368644986.1    Uniprot ID   -
Organism   Alkalibacterium putridalgicola strain BIM B-1968     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1744514..1756325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4027_RS08265 (AB4027_08265) - 1745454..1746371 (-) 918 WP_368644982.1 RluA family pseudouridine synthase -
  AB4027_RS08270 (AB4027_08270) - 1746346..1747173 (-) 828 WP_177165464.1 NAD kinase -
  AB4027_RS08275 (AB4027_08275) - 1747199..1747819 (-) 621 WP_368644983.1 GTP pyrophosphokinase family protein -
  AB4027_RS08280 (AB4027_08280) - 1747915..1748493 (+) 579 WP_368644984.1 CYTH domain-containing protein -
  AB4027_RS08285 (AB4027_08285) - 1748772..1749392 (+) 621 WP_368644985.1 DsbA family protein -
  AB4027_RS08290 (AB4027_08290) pepF 1749514..1751325 (-) 1812 WP_368644986.1 oligoendopeptidase F Regulator
  AB4027_RS08295 (AB4027_08295) - 1751441..1752517 (-) 1077 WP_368644987.1 competence protein CoiA -
  AB4027_RS08300 (AB4027_08300) - 1752635..1753276 (-) 642 WP_368644988.1 adaptor protein MecA -
  AB4027_RS08305 (AB4027_08305) spxA 1753478..1753885 (-) 408 WP_091487634.1 transcriptional regulator SpxA -
  AB4027_RS08310 (AB4027_08310) - 1754178..1755197 (-) 1020 WP_368644989.1 lipoate--protein ligase -
  AB4027_RS08315 (AB4027_08315) - 1755212..1755955 (-) 744 WP_091487638.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 69520.35 Da        Isoelectric Point: 4.5478

>NTDB_id=1027571 AB4027_RS08290 WP_368644986.1 1749514..1751325(-) (pepF) [Alkalibacterium putridalgicola strain BIM B-1968]
MAESKALPLREEIPVEQTWDLTVIYKSDEKWEEDFNETQKSVEEVKTYQGQLAFGSGTFLEALEAMLNLSRKVSALYVYA
HLKNDQDTANSTYQAMNDRARYLAALSQEATSWFEPELIALPEEQLSGYFDEQEELKQYKHYITQLTANKAHVLSAEMEA
LLAAASEVLTSSSQTFSVLNNADLKFPMVKGEDGEEVQLSHGMYGELLESTDREVRKEAFEKMYEVYESFKNTFASTLSA
NVKHHNYQAKVHHYNSARESALSDNHIPEAVHDTLIEVVNDHLPLLHRYMDLRKQVLELDELHMYDLYTPITGEASLKFT
YDEARDKTFEGLDVLGPEYRAVLDDAFNSRWIDVVENKGKRSGAYSSGMYDTNPYILLNWHDSLNHLYTLVHELGHSAHS
YFTRKNQPYVYGNYSIFLAEIASTTNENLLTDYLLETTEDPKARAYVLNHYLDGFKGTVFRQTQFAEFEHFMHEEAAKGT
PLTADYLSESYRELNSKYYGDAVEKDEAIQYEWARIPHFYYNYYVYQYSTGFCAATALADKILNKEEGALDKYLSYLKAG
SSDYPIEVMKKAGVDMTERDYLERAMKVFEERLDELEKALDSI

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=1027571 AB4027_RS08290 WP_368644986.1 1749514..1751325(-) (pepF) [Alkalibacterium putridalgicola strain BIM B-1968]
ATGGCTGAATCAAAAGCTTTACCCTTACGAGAAGAAATACCAGTCGAACAGACTTGGGATCTTACTGTCATCTATAAATC
CGATGAGAAGTGGGAAGAAGACTTTAATGAGACTCAAAAATCAGTAGAAGAAGTGAAAACCTATCAGGGTCAATTAGCTT
TCGGCAGCGGGACTTTCCTTGAAGCACTTGAAGCGATGTTGAATCTGTCAAGAAAAGTAAGCGCTCTTTATGTCTATGCG
CACCTTAAAAATGATCAGGATACAGCGAATAGTACATATCAGGCGATGAATGACCGGGCACGCTACCTTGCAGCCTTGTC
TCAGGAAGCGACGTCCTGGTTTGAACCTGAATTGATCGCACTGCCTGAAGAACAGCTATCCGGTTATTTTGATGAACAGG
AAGAACTGAAACAATACAAACATTATATTACCCAGCTGACTGCAAACAAAGCACATGTTCTTTCAGCAGAAATGGAAGCA
CTGCTGGCAGCAGCAAGTGAAGTCCTGACCTCTTCCAGTCAGACCTTCAGTGTGCTGAACAACGCAGATCTGAAATTTCC
AATGGTCAAAGGAGAAGACGGGGAAGAGGTCCAGTTGTCTCATGGGATGTATGGAGAACTTCTGGAAAGCACGGACAGAG
AAGTAAGAAAAGAAGCCTTTGAAAAAATGTACGAGGTTTACGAAAGTTTCAAGAATACATTTGCCAGCACGCTCTCAGCA
AATGTCAAGCATCATAATTATCAGGCTAAAGTCCATCATTATAATTCTGCAAGAGAAAGTGCCTTGTCAGATAATCACAT
ACCTGAAGCCGTGCATGATACACTGATAGAAGTCGTTAATGATCATCTGCCGCTGCTGCACAGATACATGGATCTGAGAA
AACAGGTCCTGGAACTGGATGAACTGCATATGTATGACTTATATACACCGATCACCGGTGAAGCCAGCCTGAAGTTCACA
TACGATGAAGCAAGAGACAAAACATTTGAGGGACTGGATGTTCTTGGTCCTGAATACAGAGCTGTACTCGACGATGCCTT
TAACAGCCGCTGGATCGATGTCGTTGAAAATAAAGGGAAGCGCAGTGGTGCCTATTCTTCAGGTATGTATGATACTAATC
CATATATCCTGCTAAACTGGCATGATTCACTCAATCATCTATATACACTCGTCCACGAGCTTGGACATAGTGCCCATAGC
TACTTCACGAGAAAAAATCAGCCTTATGTTTATGGGAACTATTCGATTTTTCTGGCTGAAATTGCTTCAACGACCAATGA
AAATCTGCTGACTGACTATCTCTTGGAGACAACAGAAGACCCTAAAGCAAGAGCTTACGTGCTGAACCATTATCTGGATG
GGTTTAAAGGAACGGTATTCCGTCAGACACAGTTTGCAGAATTCGAACATTTTATGCATGAAGAAGCTGCAAAAGGCACG
CCGCTTACAGCCGATTATTTGAGCGAAAGTTACAGAGAACTGAACAGCAAGTATTATGGTGATGCTGTTGAAAAAGATGA
GGCCATTCAATATGAGTGGGCGCGTATCCCGCATTTCTACTATAACTACTATGTCTATCAATATTCTACAGGCTTCTGTG
CCGCGACAGCTTTGGCTGATAAGATCCTTAACAAAGAAGAAGGGGCATTGGATAAATATCTGTCTTACCTGAAAGCAGGA
AGCAGTGACTATCCGATCGAAGTAATGAAAAAAGCAGGCGTGGATATGACGGAAAGAGATTATCTGGAAAGAGCCATGAA
AGTCTTTGAAGAACGACTGGATGAACTAGAAAAAGCGCTGGACTCTATTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

55.102

97.512

0.537

Multiple sequence alignment