Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   AB3U99_RS22015 Genome accession   NZ_CP162613
Coordinates   4649851..4651608 (-) Length   585 a.a.
NCBI ID   WP_400243881.1    Uniprot ID   -
Organism   Niallia tiangongensis strain JL1B1071     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4644851..4656608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3U99_RS21995 (AB3U99_22040) - 4645235..4646182 (+) 948 WP_400243877.1 LPO_1073/Vpar_1526 family protein -
  AB3U99_RS22000 (AB3U99_22045) - 4646740..4646922 (-) 183 WP_400243878.1 hypothetical protein -
  AB3U99_RS22005 (AB3U99_22050) - 4647404..4647925 (-) 522 WP_400243879.1 MarR family winged helix-turn-helix transcriptional regulator -
  AB3U99_RS22010 (AB3U99_22055) rcrQ 4648008..4649858 (-) 1851 WP_400243880.1 ABC transporter ATP-binding protein Regulator
  AB3U99_RS22015 (AB3U99_22060) rcrP 4649851..4651608 (-) 1758 WP_400243881.1 ABC transporter ATP-binding protein Regulator
  AB3U99_RS22020 (AB3U99_22065) - 4651890..4652447 (-) 558 WP_400243882.1 thioredoxin family protein -
  AB3U99_RS22025 (AB3U99_22070) - 4652615..4653685 (+) 1071 WP_400243883.1 hypothetical protein -
  AB3U99_RS22030 (AB3U99_22075) - 4654054..4655004 (-) 951 WP_400243884.1 NERD domain-containing protein -
  AB3U99_RS22035 (AB3U99_22080) - 4655753..4656595 (-) 843 WP_400248149.1 aldo/keto reductase -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 64784.53 Da        Isoelectric Point: 6.2085

>NTDB_id=1027538 AB3U99_RS22015 WP_400243881.1 4649851..4651608(-) (rcrP) [Niallia tiangongensis strain JL1B1071]
MLNIFKNFQKKDWMLISCALVFIVGQVWLDLKLPDYMAEITRLVQTEGSELSDVLTQGAFMLLCAVGSMAASIITVYFAA
KVAAGFSNRLRKKVFDKTLSFSMEELSSFSTASLITRSTNDITQVQMLIILSLQIVIKAPIIAVWGVLKIMGKSWEWTAA
TGVAIAVLLVLIAIVVLVALPKFKVIQKLTDNINMVTRENLTGIRVVHAYNATRYHEDKFEKANKELTDTNLFTTRIMAV
MMPTISLIMSGMSLAIYWIGAVLINNAPIAGRLPLFSDMVVFSSYAMQIIMAFMMLSIAFVMLPRAAVSARRISEVLDTE
VKIKSGSKTEGDSQGEIEFRHVSFKYPGASDYILRDISFTASKGETVAIIGSTGSGKSTLLNLIPRFMEATDGEILVDGL
NVKNYKLETLRDKIGYVSQKAVMFSGSVSSNVAFGTENKQSKEEMEVKRAVEIAQGKDFIEKMDQQYEATISQGGTNLSG
GQKQRLSIARAVYKDPEIYLFDDSFSALDYKTDRVLRSKLKEEINDATNIIIAQRIGTIKDADRILVLDNGEVVGMGTHD
ELMITCDVYQEIALSQLSKEELEIG

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=1027538 AB3U99_RS22015 WP_400243881.1 4649851..4651608(-) (rcrP) [Niallia tiangongensis strain JL1B1071]
ATGTTAAATATTTTTAAAAACTTTCAGAAAAAGGACTGGATGCTCATTTCATGTGCGCTAGTCTTTATCGTTGGGCAAGT
ATGGCTTGATTTGAAGCTTCCAGATTATATGGCTGAAATCACTAGACTGGTTCAGACAGAAGGTAGTGAGTTAAGTGACG
TTCTCACACAAGGGGCGTTTATGCTGCTTTGTGCAGTGGGGAGCATGGCTGCTTCCATTATAACCGTTTATTTTGCGGCA
AAGGTTGCTGCCGGATTTTCGAATCGACTGCGTAAAAAGGTCTTTGATAAAACCTTATCCTTTTCGATGGAAGAACTGTC
TAGTTTTTCTACAGCGAGCTTAATTACTCGTTCTACTAATGATATTACGCAAGTGCAAATGCTGATTATCTTAAGCTTAC
AAATTGTGATAAAGGCTCCGATTATTGCGGTTTGGGGCGTTTTGAAGATAATGGGAAAAAGCTGGGAATGGACCGCTGCT
ACAGGTGTTGCGATTGCTGTCCTATTAGTTTTAATTGCAATCGTTGTTCTTGTTGCACTGCCTAAATTCAAAGTAATCCA
GAAGTTAACAGATAATATTAATATGGTGACAAGAGAGAATTTAACGGGTATCCGTGTTGTTCATGCTTATAATGCAACGC
GTTACCACGAAGATAAGTTTGAGAAAGCGAATAAGGAACTGACAGATACGAATCTTTTTACCACTAGAATAATGGCTGTT
ATGATGCCAACCATTTCTCTTATTATGTCTGGGATGAGTCTTGCCATTTATTGGATTGGAGCGGTATTAATCAATAATGC
TCCTATTGCGGGTAGACTACCTTTGTTCTCGGATATGGTGGTGTTTTCTTCTTACGCGATGCAGATCATTATGGCCTTTA
TGATGCTCTCTATAGCATTTGTCATGCTTCCTCGTGCTGCTGTTTCAGCAAGAAGAATCAGCGAAGTGCTGGACACAGAG
GTGAAAATAAAGAGTGGATCGAAGACAGAAGGAGACAGCCAAGGGGAAATTGAATTCCGCCATGTTAGCTTTAAGTATCC
TGGTGCGAGTGATTACATTCTTCGAGATATCAGCTTTACTGCTTCCAAGGGGGAAACAGTAGCCATTATTGGTTCAACAG
GTAGTGGAAAAAGTACACTACTAAACCTGATTCCACGCTTTATGGAAGCAACAGATGGCGAAATTTTGGTGGATGGTCTT
AATGTGAAAAATTATAAGCTAGAAACATTGCGAGACAAAATTGGGTATGTGTCCCAAAAAGCCGTTATGTTCAGTGGTTC
CGTTTCTTCCAATGTCGCTTTTGGTACAGAGAACAAGCAATCGAAAGAGGAAATGGAAGTTAAACGCGCAGTGGAAATTG
CGCAAGGGAAGGATTTTATTGAAAAAATGGATCAACAATATGAAGCAACGATTTCACAAGGTGGAACCAATCTTTCTGGT
GGTCAGAAACAAAGATTATCGATTGCACGTGCCGTTTATAAAGATCCGGAAATCTATTTATTTGATGATTCCTTTTCCGC
ATTGGACTATAAAACAGATCGCGTGTTGCGTTCCAAGCTAAAAGAAGAAATAAACGATGCTACAAACATTATTATTGCAC
AGCGCATTGGAACCATTAAGGATGCTGACCGAATTCTTGTATTAGATAATGGGGAAGTAGTTGGAATGGGTACACACGAT
GAGCTGATGATCACTTGCGATGTCTATCAAGAAATTGCCTTATCACAATTATCGAAGGAGGAGCTTGAAATTGGGTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(19-293)

ABC transporter (ABC_tran)

(354-504)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

49.249

100

0.504

Multiple sequence alignment