Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   AB3U99_RS22010 Genome accession   NZ_CP162613
Coordinates   4648008..4649858 (-) Length   616 a.a.
NCBI ID   WP_400243880.1    Uniprot ID   -
Organism   Niallia tiangongensis strain JL1B1071     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4643008..4654858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3U99_RS21980 (AB3U99_22025) - 4643541..4644242 (-) 702 WP_400243874.1 hypothetical protein -
  AB3U99_RS21985 (AB3U99_22030) - 4644239..4644376 (-) 138 WP_400243875.1 hypothetical protein -
  AB3U99_RS21990 (AB3U99_22035) - 4644345..4645040 (-) 696 WP_400243876.1 hypothetical protein -
  AB3U99_RS21995 (AB3U99_22040) - 4645235..4646182 (+) 948 WP_400243877.1 LPO_1073/Vpar_1526 family protein -
  AB3U99_RS22000 (AB3U99_22045) - 4646740..4646922 (-) 183 WP_400243878.1 hypothetical protein -
  AB3U99_RS22005 (AB3U99_22050) - 4647404..4647925 (-) 522 WP_400243879.1 MarR family winged helix-turn-helix transcriptional regulator -
  AB3U99_RS22010 (AB3U99_22055) rcrQ 4648008..4649858 (-) 1851 WP_400243880.1 ABC transporter ATP-binding protein Regulator
  AB3U99_RS22015 (AB3U99_22060) rcrP 4649851..4651608 (-) 1758 WP_400243881.1 ABC transporter ATP-binding protein Regulator
  AB3U99_RS22020 (AB3U99_22065) - 4651890..4652447 (-) 558 WP_400243882.1 thioredoxin family protein -
  AB3U99_RS22025 (AB3U99_22070) - 4652615..4653685 (+) 1071 WP_400243883.1 hypothetical protein -

Sequence

Protein


Download         Length: 616 a.a.        Molecular weight: 68554.02 Da        Isoelectric Point: 5.0258

>NTDB_id=1027537 AB3U99_RS22010 WP_400243880.1 4648008..4649858(-) (rcrQ) [Niallia tiangongensis strain JL1B1071]
MGKKGHEKEAENKRSQSQTEELDKQPTKSIPPGAKGMNFSSLKELAVYCKAYFPIIILALILAMAAAIFSIIGPDQLSKM
TDYITEGLMGEINIDAVYDIAIFLVFLYGLGYIFNYVQGFIMATVTQRISKQLRRDISGKINRLPLSYFDNTTTGDVLSR
VTNDVDMVGQTMNQSVSSLITAVTMFVGSLIMMFYTNWIMAIAAILSTFIGFAFMFFIISKSQKYFAQQQQELGKLNGHI
EEIYSGHNVVKAYNGEQQAKDAFSSINTRLFESAWKSQFMSGLMMPLMLFIGNFGYVVVCIVGAALAVNGSISFGVIVAF
MLYIRLFTQPLQQIAQAATNLQSTAAASGRVFEFLSEEELVREDEKKEELVNVKGDVEFKHVRFGYDEDKTVIQDFSVRV
NAGQKVAIVGPTGAGKTTLINLLMRFYELNGGEITIDGVPTNQMTRESLHDLFCMVLQDTWIFEGSIRDNIVYSRENVSD
AEVEAACKAVGLHHFIQTLPNRYDAILDDKTSLSAGQKQLITIARAMVKMAPLLILDEATSSVDTRTELLIQQAMDKLTE
GKTSFVIAHRLSTIKNADLILVMKEGDIIEAGTHQELIEKNGFYAELYNSQFEEAS

Nucleotide


Download         Length: 1851 bp        

>NTDB_id=1027537 AB3U99_RS22010 WP_400243880.1 4648008..4649858(-) (rcrQ) [Niallia tiangongensis strain JL1B1071]
TTGGGTAAAAAAGGTCATGAAAAAGAAGCGGAAAATAAACGAAGTCAATCCCAAACAGAGGAGCTGGATAAACAGCCAAC
AAAATCGATCCCTCCAGGTGCAAAAGGCATGAATTTTTCCAGTTTAAAGGAACTGGCGGTTTACTGCAAGGCGTATTTTC
CCATCATTATATTGGCATTAATCCTTGCGATGGCAGCCGCAATCTTTAGTATTATTGGCCCTGACCAGCTTAGCAAAATG
ACTGACTATATTACAGAAGGATTAATGGGAGAAATTAACATTGATGCTGTATATGATATTGCAATTTTTCTCGTGTTCCT
CTATGGTTTAGGCTATATTTTTAACTATGTTCAAGGCTTTATTATGGCAACCGTAACACAAAGGATTTCCAAACAATTAA
GAAGAGATATTTCGGGAAAAATTAATCGATTGCCTTTAAGCTATTTTGATAATACAACAACAGGTGATGTCCTTAGCCGT
GTAACAAATGATGTTGATATGGTAGGACAGACGATGAACCAAAGTGTTAGTAGCTTAATTACGGCTGTTACGATGTTCGT
CGGTTCCTTAATCATGATGTTTTATACAAACTGGATCATGGCTATTGCAGCTATCCTATCCACTTTCATAGGCTTTGCCT
TTATGTTTTTTATCATTTCGAAATCACAAAAGTACTTTGCTCAACAGCAGCAAGAGCTTGGGAAACTAAATGGTCATATT
GAGGAAATCTATTCTGGCCATAATGTTGTGAAGGCTTATAATGGGGAGCAACAGGCGAAGGATGCCTTTTCTTCCATTAA
TACGCGACTATTTGAAAGTGCCTGGAAATCGCAATTTATGTCAGGACTGATGATGCCATTAATGCTGTTTATTGGAAACT
TTGGCTATGTGGTTGTCTGTATTGTTGGTGCAGCTCTAGCCGTTAATGGCAGTATTTCGTTTGGGGTTATTGTTGCCTTT
ATGCTGTACATTCGCTTATTTACACAGCCACTCCAACAAATTGCGCAAGCAGCGACAAATCTACAGTCAACGGCAGCAGC
AAGTGGGCGTGTTTTTGAATTCCTGTCAGAAGAAGAGCTTGTAAGAGAAGACGAGAAGAAAGAAGAACTGGTGAATGTCA
AAGGCGATGTGGAATTTAAGCATGTACGCTTTGGATATGACGAAGATAAAACGGTTATTCAAGATTTCTCCGTACGTGTG
AATGCTGGTCAGAAAGTCGCAATAGTGGGACCAACTGGAGCGGGGAAAACAACGTTAATTAACTTGCTTATGCGTTTTTA
TGAGTTAAATGGTGGGGAGATAACCATTGATGGGGTTCCAACCAATCAAATGACAAGAGAATCGCTCCATGATCTATTCT
GCATGGTGCTCCAAGATACATGGATATTTGAAGGCTCTATCCGTGATAATATCGTTTATTCAAGAGAAAACGTATCCGAT
GCAGAAGTGGAAGCAGCCTGCAAAGCAGTTGGATTGCATCATTTCATCCAAACCCTGCCAAACCGCTATGACGCCATTTT
AGATGACAAGACGAGCTTGTCGGCAGGGCAAAAGCAGCTTATCACAATTGCCCGTGCGATGGTCAAAATGGCACCATTGC
TTATCTTAGATGAAGCGACTAGCTCTGTCGATACGCGCACAGAATTGCTGATTCAACAAGCGATGGATAAGCTGACAGAA
GGAAAAACTTCCTTTGTTATCGCCCATAGACTGTCGACGATAAAAAATGCTGACTTAATTCTCGTGATGAAAGAGGGAGA
TATTATCGAAGCTGGAACGCATCAGGAACTAATTGAAAAGAATGGATTCTATGCAGAACTTTATAATAGTCAGTTTGAAG
AGGCGTCCTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(394-541)

ABC transporter transmembrane region (ABC_membrane)

(56-331)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

57.739

93.344

0.539

Multiple sequence alignment