Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   AB3U99_RS16215 Genome accession   NZ_CP162613
Coordinates   3354284..3356701 (-) Length   805 a.a.
NCBI ID   WP_400242591.1    Uniprot ID   -
Organism   Niallia tiangongensis strain JL1B1071     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3349284..3361701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3U99_RS16200 (AB3U99_16215) - 3352084..3353163 (-) 1080 WP_400242589.1 AI-2E family transporter -
  AB3U99_RS16205 (AB3U99_16220) - 3353294..3353425 (-) 132 WP_400242590.1 DUF3918 family protein -
  AB3U99_RS16210 (AB3U99_16225) - 3353481..3353669 (-) 189 WP_016202904.1 hypothetical protein -
  AB3U99_RS16215 (AB3U99_16230) recD2 3354284..3356701 (-) 2418 WP_400242591.1 ATP-dependent RecD-like DNA helicase Machinery gene
  AB3U99_RS16220 (AB3U99_16235) - 3356734..3357384 (-) 651 WP_400242592.1 tetratricopeptide repeat protein -
  AB3U99_RS16225 (AB3U99_16240) mnmA 3357545..3358660 (-) 1116 WP_400242593.1 tRNA 2-thiouridine(34) synthase MnmA -
  AB3U99_RS16230 (AB3U99_16245) - 3358708..3359850 (-) 1143 WP_400242594.1 cysteine desulfurase family protein -
  AB3U99_RS16235 (AB3U99_16250) cymR 3359979..3360398 (-) 420 WP_312093375.1 cysteine metabolism transcriptional regulator CymR -
  AB3U99_RS16240 (AB3U99_16255) - 3360398..3361081 (-) 684 WP_400242595.1 YitT family protein -

Sequence

Protein


Download         Length: 805 a.a.        Molecular weight: 90927.02 Da        Isoelectric Point: 4.7311

>NTDB_id=1027523 AB3U99_RS16215 WP_400242591.1 3354284..3356701(-) (recD2) [Niallia tiangongensis strain JL1B1071]
MNEQNSLDLFDKEKKYIKGRHLVTIFHNEQNLYSVIRIRVDETNHDYDDKEAVITGYLPKMNEEETYTFYGDFKEHPRFG
LQLQATSFRKEMPQTKQGVIAYLSSNLFKGIGEKTAENIVETLGEEAISKIMNQPSILDTVPKLAPDKAKVLYDTLMKNQ
GLEQAMVSLNQFGFGPQLSMKIYQVYKENTIETVQTNPYKLVEDIEGIGFGKADDLGAQIGITGNHPDRLKAGCLYILEL
CSNQEGHVYLHAEHLLEKVKTLLEENQKEEIEFSQIADQIIQLEEEGKIIVENKKIYLPSLFFSEKGLVRNIKRVMEQSE
YKDQFPESEFLLALGNLEDRIGVQYAPSQREAIQTALMSPMLILTGGPGTGKTTVIKGIVELYGELHGCSLDPKDYKNDE
PYPFILAAPTGRAAKRMAESTGLPAVTIHRLLGWNGTGTFERDEDHPLEGKILIVDETSMVDIWLAHQLFKALPEHIQVI
IVGDEDQLPSVGPGQVLKDLLDSACIPTVKLKDIYRQAEGSSIIELAHEMKKGQLPTNLLIPQGDRSFIKCSSNQIPQAI
EKIVLNAKNKGFAPMDIQVLAPMYRGPAGIDRLNAILQEILNPNPDGSRKELKFGEVTYRIGDKVLQLVNQPESNVFNGD
MGEIVSIFYAKENTEKQDMVIVSFDGIEATYTRQDLNQITLAYCCSVHKSQGSEFPIVIMPIVKSYYRMLRRNLIYTGIT
RSKQFLILCGEIEAMELGVSRNDELNRQTTLKEKIKEMFADVYQPDEKAELSTEESFDLLYEGKINEIDPMIGMDNITPY
DFMEA

Nucleotide


Download         Length: 2418 bp        

>NTDB_id=1027523 AB3U99_RS16215 WP_400242591.1 3354284..3356701(-) (recD2) [Niallia tiangongensis strain JL1B1071]
TTGAACGAGCAAAATTCTTTGGATCTTTTTGATAAAGAAAAAAAGTATATAAAAGGACGTCACCTTGTTACTATTTTTCA
TAATGAACAAAATCTCTATTCTGTTATAAGAATAAGAGTAGATGAAACCAATCATGATTATGATGATAAAGAAGCGGTTA
TTACAGGCTATTTGCCAAAGATGAATGAGGAAGAGACTTATACATTCTACGGTGATTTTAAAGAGCATCCAAGATTTGGT
CTGCAGCTGCAAGCAACTTCCTTTCGAAAAGAGATGCCACAAACAAAACAAGGGGTTATCGCTTATTTATCCAGCAATCT
GTTTAAGGGGATTGGGGAAAAAACAGCTGAAAATATTGTGGAAACATTGGGAGAAGAGGCTATTTCTAAAATTATGAATC
AGCCATCCATTTTAGATACGGTGCCTAAACTTGCTCCAGATAAAGCAAAGGTATTATATGATACTCTAATGAAAAATCAG
GGCCTAGAACAAGCAATGGTTTCGCTTAATCAATTTGGGTTTGGTCCACAATTATCAATGAAAATTTATCAAGTATATAA
AGAAAATACAATAGAAACAGTGCAGACCAATCCTTATAAATTGGTGGAAGATATAGAAGGAATAGGATTTGGAAAAGCGG
ATGATTTAGGGGCACAAATAGGGATAACGGGAAATCACCCCGACCGCCTAAAAGCAGGCTGTTTATATATTTTAGAGTTA
TGCAGTAATCAAGAGGGACATGTTTACCTCCATGCTGAACATTTGCTGGAAAAAGTAAAAACCCTGCTTGAAGAAAATCA
AAAGGAGGAAATTGAATTTTCGCAAATAGCAGATCAAATTATCCAGCTGGAAGAAGAAGGGAAGATCATTGTCGAAAATA
AGAAAATATATTTACCTTCCTTGTTTTTCTCGGAAAAAGGTCTTGTAAGAAATATTAAGCGAGTAATGGAACAATCGGAG
TACAAGGACCAATTTCCAGAGTCTGAATTTCTTCTTGCATTAGGAAATTTGGAGGATCGTATAGGTGTCCAGTATGCCCC
ATCGCAACGAGAAGCAATTCAAACGGCGCTGATGTCTCCGATGCTTATACTAACAGGGGGTCCTGGTACAGGGAAAACGA
CAGTAATAAAAGGAATTGTTGAATTGTATGGAGAATTACATGGCTGCTCGCTAGATCCGAAAGATTATAAAAATGATGAG
CCTTATCCTTTTATTCTTGCGGCACCTACTGGAAGAGCAGCAAAGCGGATGGCAGAATCGACAGGTTTACCTGCAGTTAC
AATTCATCGCTTATTAGGATGGAATGGAACAGGAACGTTTGAGCGAGATGAGGATCATCCTCTCGAAGGAAAGATTTTAA
TTGTGGATGAAACTTCGATGGTAGACATATGGCTTGCGCATCAATTATTTAAAGCTTTACCAGAACATATTCAAGTGATT
ATTGTAGGGGATGAAGATCAGCTTCCATCCGTAGGGCCAGGACAAGTGTTAAAGGATTTGCTTGATTCAGCTTGCATCCC
AACTGTTAAACTGAAGGATATTTACCGACAAGCAGAAGGGTCTTCTATAATCGAACTAGCCCATGAAATGAAAAAGGGGC
AGCTGCCAACCAATTTACTTATACCGCAGGGGGATCGCTCGTTTATAAAATGCTCTTCCAATCAAATTCCACAAGCAATT
GAAAAAATTGTGCTAAATGCCAAAAATAAAGGATTTGCCCCTATGGATATACAAGTTTTGGCTCCGATGTATAGAGGACC
AGCGGGGATTGATCGATTGAATGCTATTTTACAGGAAATATTAAATCCCAATCCCGATGGCTCCAGAAAAGAGCTGAAAT
TTGGAGAGGTTACATACCGAATTGGTGATAAAGTTCTTCAGCTTGTCAATCAACCAGAAAGCAATGTTTTTAATGGAGAT
ATGGGGGAAATTGTATCGATTTTTTATGCGAAGGAAAATACAGAAAAACAAGATATGGTTATTGTCTCTTTTGATGGCAT
AGAAGCAACTTATACGAGACAGGATTTAAATCAAATAACCCTTGCTTACTGTTGTTCTGTTCATAAATCACAAGGAAGCG
AGTTTCCAATCGTTATCATGCCAATTGTAAAAAGCTATTATCGGATGCTAAGACGAAATCTCATTTATACTGGCATCACA
AGAAGTAAACAATTTTTAATTCTTTGCGGTGAAATAGAAGCGATGGAACTAGGCGTCAGCAGAAATGACGAGCTAAATCG
CCAAACGACCTTAAAAGAAAAAATCAAAGAAATGTTTGCAGATGTCTACCAACCAGATGAAAAAGCAGAGCTGTCTACAG
AGGAGTCTTTTGATTTATTGTATGAAGGCAAAATAAATGAAATTGACCCAATGATCGGCATGGACAATATTACTCCATAT
GATTTTATGGAAGCATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

AAA domain (AAA_30)

(345-552)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(682-729)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(593-664)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

61.432

98.882

0.607

Multiple sequence alignment