Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | AB3U99_RS15540 | Genome accession | NZ_CP162613 |
| Coordinates | 3215541..3216608 (-) | Length | 355 a.a. |
| NCBI ID | WP_400242359.1 | Uniprot ID | - |
| Organism | Niallia tiangongensis strain JL1B1071 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3210541..3221608
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB3U99_RS15500 (AB3U99_15515) | - | 3211521..3212327 (+) | 807 | WP_400242345.1 | YqhG family protein | - |
| AB3U99_RS15505 (AB3U99_15520) | - | 3212387..3212575 (-) | 189 | WP_400242347.1 | YqzE family protein | - |
| AB3U99_RS15510 (AB3U99_15525) | comGG | 3212626..3213006 (-) | 381 | WP_400242348.1 | competence type IV pilus minor pilin ComGG | - |
| AB3U99_RS15515 (AB3U99_15530) | comGF | 3213003..3213455 (-) | 453 | WP_400242350.1 | competence type IV pilus minor pilin ComGF | - |
| AB3U99_RS15520 (AB3U99_15535) | - | 3213452..3213775 (-) | 324 | WP_400242352.1 | hypothetical protein | - |
| AB3U99_RS15525 (AB3U99_15540) | comGD | 3213759..3214262 (-) | 504 | WP_400242354.1 | competence type IV pilus minor pilin ComGD | - |
| AB3U99_RS15530 (AB3U99_15545) | comGC | 3214193..3214507 (-) | 315 | WP_400242356.1 | competence type IV pilus major pilin ComGC | - |
| AB3U99_RS15535 (AB3U99_15550) | comGB | 3214520..3215581 (-) | 1062 | WP_400242357.1 | competence type IV pilus assembly protein ComGB | - |
| AB3U99_RS15540 (AB3U99_15555) | comGA | 3215541..3216608 (-) | 1068 | WP_400242359.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| AB3U99_RS15550 (AB3U99_15565) | - | 3217009..3217953 (-) | 945 | WP_400242360.1 | cation diffusion facilitator family transporter | - |
| AB3U99_RS15555 (AB3U99_15570) | - | 3218004..3219047 (-) | 1044 | WP_400242362.1 | flavin-containing monooxygenase | - |
| AB3U99_RS15560 (AB3U99_15575) | - | 3219331..3220029 (+) | 699 | WP_400242364.1 | helix-turn-helix transcriptional regulator | - |
| AB3U99_RS15565 (AB3U99_15580) | - | 3220087..3220722 (-) | 636 | WP_400242366.1 | MBL fold metallo-hydrolase | - |
| AB3U99_RS15570 (AB3U99_15585) | - | 3220735..3221052 (-) | 318 | WP_400242368.1 | MTH1187 family thiamine-binding protein | - |
Sequence
Protein
Download Length: 355 a.a. Molecular weight: 40207.48 Da Isoelectric Point: 7.9620
>NTDB_id=1027520 AB3U99_RS15540 WP_400242359.1 3215541..3216608(-) (comGA) [Niallia tiangongensis strain JL1B1071]
MLSIEALANRIICDAVEQNATDIHITPRQKESVLQLRIANHLLTRLVITAEECDKLISHFKFTASMDIGERRKPQNGSIS
TSINGQYIGLRLSTLPSYPHESLVIRVLSDKNMLPIYHISLFPNVSRKLISLLKHAHGLIILTGPTGSGKTTTLYSLLNE
NAHLYQRNVISLEDPIEKPQENVLQIQVNEKAGITYSTGLKAILRHDPDIIMVGEIRDRETAHIAIRASLTGHLVLTTMH
TRDARGAIHRLLEFGIKETEIEQTLIAVTAQRLVEMVCPFCDDGCSPNCYRLDDRLKRSTVFEMLTGRMIANILYNRSDD
WSYKYKTLGDIICKGIALGYIKNGEYERWIYDEKK
MLSIEALANRIICDAVEQNATDIHITPRQKESVLQLRIANHLLTRLVITAEECDKLISHFKFTASMDIGERRKPQNGSIS
TSINGQYIGLRLSTLPSYPHESLVIRVLSDKNMLPIYHISLFPNVSRKLISLLKHAHGLIILTGPTGSGKTTTLYSLLNE
NAHLYQRNVISLEDPIEKPQENVLQIQVNEKAGITYSTGLKAILRHDPDIIMVGEIRDRETAHIAIRASLTGHLVLTTMH
TRDARGAIHRLLEFGIKETEIEQTLIAVTAQRLVEMVCPFCDDGCSPNCYRLDDRLKRSTVFEMLTGRMIANILYNRSDD
WSYKYKTLGDIICKGIALGYIKNGEYERWIYDEKK
Nucleotide
Download Length: 1068 bp
>NTDB_id=1027520 AB3U99_RS15540 WP_400242359.1 3215541..3216608(-) (comGA) [Niallia tiangongensis strain JL1B1071]
GTGTTATCTATTGAAGCTTTAGCCAATCGTATTATTTGTGATGCAGTAGAGCAGAATGCTACTGACATTCACATAACCCC
GAGACAAAAGGAATCTGTCCTTCAATTGCGGATTGCTAATCATTTGCTTACTAGATTAGTAATAACTGCGGAGGAATGTG
ACAAGTTAATCTCTCATTTTAAGTTTACGGCATCCATGGATATTGGAGAACGAAGAAAACCGCAAAATGGATCTATTTCC
ACGAGCATAAATGGTCAATATATTGGCCTACGTTTATCAACCTTACCTTCTTACCCTCATGAAAGTTTAGTTATTCGCGT
ACTTTCGGACAAAAATATGCTTCCAATCTATCATATCTCCTTATTTCCAAATGTTTCTCGAAAATTAATCTCTTTATTAA
AGCACGCTCATGGCTTAATTATCCTCACTGGTCCGACTGGATCTGGCAAAACGACAACACTCTATTCCCTCTTAAATGAA
AATGCTCACCTTTATCAAAGGAATGTTATCAGCTTAGAAGATCCTATTGAAAAGCCCCAGGAAAATGTGCTTCAAATTCA
GGTCAATGAGAAGGCTGGCATTACGTATTCTACAGGATTAAAAGCGATTCTTCGCCACGATCCCGACATTATCATGGTTG
GAGAAATACGAGATAGAGAAACTGCCCATATCGCAATAAGGGCAAGTTTAACAGGGCATTTGGTATTAACTACCATGCAT
ACAAGGGATGCGAGAGGTGCGATTCACCGATTGCTCGAGTTTGGAATAAAGGAGACAGAAATTGAACAAACCTTAATTGC
CGTTACTGCACAAAGACTGGTAGAAATGGTATGTCCATTTTGTGATGATGGCTGTTCACCTAACTGTTACCGTTTAGATG
ATCGATTAAAAAGATCGACTGTGTTTGAAATGTTAACTGGAAGGATGATTGCAAACATTCTTTACAATCGGTCAGATGAT
TGGAGTTATAAGTATAAAACATTAGGGGATATCATTTGTAAAGGGATAGCGTTAGGGTATATAAAGAATGGGGAATATGA
ACGGTGGATTTATGATGAAAAGAAATAA
GTGTTATCTATTGAAGCTTTAGCCAATCGTATTATTTGTGATGCAGTAGAGCAGAATGCTACTGACATTCACATAACCCC
GAGACAAAAGGAATCTGTCCTTCAATTGCGGATTGCTAATCATTTGCTTACTAGATTAGTAATAACTGCGGAGGAATGTG
ACAAGTTAATCTCTCATTTTAAGTTTACGGCATCCATGGATATTGGAGAACGAAGAAAACCGCAAAATGGATCTATTTCC
ACGAGCATAAATGGTCAATATATTGGCCTACGTTTATCAACCTTACCTTCTTACCCTCATGAAAGTTTAGTTATTCGCGT
ACTTTCGGACAAAAATATGCTTCCAATCTATCATATCTCCTTATTTCCAAATGTTTCTCGAAAATTAATCTCTTTATTAA
AGCACGCTCATGGCTTAATTATCCTCACTGGTCCGACTGGATCTGGCAAAACGACAACACTCTATTCCCTCTTAAATGAA
AATGCTCACCTTTATCAAAGGAATGTTATCAGCTTAGAAGATCCTATTGAAAAGCCCCAGGAAAATGTGCTTCAAATTCA
GGTCAATGAGAAGGCTGGCATTACGTATTCTACAGGATTAAAAGCGATTCTTCGCCACGATCCCGACATTATCATGGTTG
GAGAAATACGAGATAGAGAAACTGCCCATATCGCAATAAGGGCAAGTTTAACAGGGCATTTGGTATTAACTACCATGCAT
ACAAGGGATGCGAGAGGTGCGATTCACCGATTGCTCGAGTTTGGAATAAAGGAGACAGAAATTGAACAAACCTTAATTGC
CGTTACTGCACAAAGACTGGTAGAAATGGTATGTCCATTTTGTGATGATGGCTGTTCACCTAACTGTTACCGTTTAGATG
ATCGATTAAAAAGATCGACTGTGTTTGAAATGTTAACTGGAAGGATGATTGCAAACATTCTTTACAATCGGTCAGATGAT
TGGAGTTATAAGTATAAAACATTAGGGGATATCATTTGTAAAGGGATAGCGTTAGGGTATATAAAGAATGGGGAATATGA
ACGGTGGATTTATGATGAAAAGAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
54.085 |
100 |
0.541 |