Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   AB3U99_RS06655 Genome accession   NZ_CP162613
Coordinates   1386771..1388594 (+) Length   607 a.a.
NCBI ID   WP_400246537.1    Uniprot ID   -
Organism   Niallia tiangongensis strain JL1B1071     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1381771..1393594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3U99_RS06640 (AB3U99_06630) mecA 1382372..1383034 (+) 663 WP_400246535.1 adaptor protein MecA -
  AB3U99_RS06645 (AB3U99_06635) cls 1383373..1384890 (+) 1518 WP_400247973.1 cardiolipin synthase -
  AB3U99_RS06650 (AB3U99_06640) - 1385421..1386602 (+) 1182 WP_400246536.1 competence protein CoiA -
  AB3U99_RS06655 (AB3U99_06645) pepF 1386771..1388594 (+) 1824 WP_400246537.1 oligoendopeptidase F Regulator
  AB3U99_RS06660 (AB3U99_06650) - 1388678..1389328 (-) 651 WP_400242608.1 hypothetical protein -
  AB3U99_RS06665 (AB3U99_06655) - 1389258..1390262 (-) 1005 WP_400242607.1 transposase -
  AB3U99_RS06670 (AB3U99_06660) - 1390675..1391814 (+) 1140 WP_400246538.1 murein hydrolase activator EnvC family protein -
  AB3U99_RS06675 (AB3U99_06665) - 1392136..1392522 (-) 387 WP_400246539.1 hypothetical protein -

Sequence

Protein


Download         Length: 607 a.a.        Molecular weight: 69846.59 Da        Isoelectric Point: 4.7698

>NTDB_id=1027507 AB3U99_RS06655 WP_400246537.1 1386771..1388594(+) (pepF) [Niallia tiangongensis strain JL1B1071]
MSTETGVKKLLLRNEVPVEDTWKLEDIFATDEEWDKEFQEVKNLSQKATGYQGKLADSADVLYEALQNQDELLSRLGKLY
TYAHMRYDQDTTNSYYQGVDGRIKSLYAQAASALAYMVPELLSIDEKVINTFLEEKEELQLYKKALEEVNLQRPHVLSAE
QEALLAQASEVLDSSSNTFGMLNNADLEFPTIKDENGEEVEVTHGRYSRFLESADERVRHDAFMAVYDTYGKFKNTFAST
LSGEVKNHTFNAKIRNYKSPRHAALAANNIPEQVYENLVETINKNLPLLHRYVKLRKKVLGVEKLHMYDLYTPLVKDVKM
EIPYDEAKELVVKGLAPLGEEYASILKEGFENRWVDVHENKGKRSGAYSSGAYGTNPYILMNWQDNVNNLFTLAHEFGHS
VHSYYTRKSQPYPYGNYSIFVAEVASTCNESLLNDYLLKTITDKQKRLYLLNYFLEGFRGTVFRQTMFAEFEQLIHEKAS
NNEPLTADLLTKEYYALNQKYFGEEDIVIDEEIGLEWSRIPHFYYNFYVYQYATGYSAATALSKQILEEGKPAVERYIDF
LKAGSSDYPIEVLKKAGVDMTSKTPIEEACKVFEEKLNEMESLLNEL

Nucleotide


Download         Length: 1824 bp        

>NTDB_id=1027507 AB3U99_RS06655 WP_400246537.1 1386771..1388594(+) (pepF) [Niallia tiangongensis strain JL1B1071]
ATGTCAACAGAAACAGGTGTTAAGAAATTACTATTACGCAATGAGGTTCCAGTAGAGGACACATGGAAATTAGAGGATAT
TTTTGCGACTGATGAAGAATGGGATAAAGAATTTCAAGAAGTGAAGAATTTATCACAAAAGGCAACTGGTTATCAAGGTA
AGCTAGCTGATAGTGCAGATGTTCTTTATGAAGCTTTACAAAATCAGGATGAGCTTCTATCAAGACTTGGAAAATTATAT
ACATATGCACATATGCGGTATGATCAAGATACAACGAATAGTTACTATCAAGGAGTAGATGGTCGTATTAAAAGCTTATA
TGCCCAAGCTGCAAGTGCGCTTGCTTATATGGTTCCAGAGTTATTATCCATTGATGAAAAAGTAATCAATACATTTTTAG
AAGAAAAGGAAGAATTACAGCTATATAAAAAGGCGTTAGAAGAAGTCAACTTGCAACGTCCGCATGTTTTAAGTGCAGAA
CAGGAAGCATTACTAGCACAAGCATCAGAAGTATTGGATTCTTCTAGCAATACATTTGGAATGCTTAATAACGCTGATTT
AGAGTTCCCAACCATTAAAGATGAGAATGGAGAAGAAGTAGAGGTTACACATGGCCGGTATTCACGCTTTTTAGAAAGTG
CAGACGAACGCGTACGTCATGATGCTTTTATGGCAGTTTATGACACCTATGGAAAATTTAAAAATACGTTTGCCTCTACT
TTAAGTGGAGAAGTAAAAAATCATACATTTAATGCAAAGATAAGAAATTATAAATCGCCAAGACATGCGGCACTGGCTGC
GAATAATATTCCTGAACAAGTGTATGAAAACTTAGTGGAAACAATAAATAAAAATTTACCATTATTGCATCGCTATGTGA
AGCTTCGCAAAAAAGTTCTTGGTGTAGAAAAGCTTCATATGTATGATCTTTATACACCATTAGTAAAAGATGTAAAGATG
GAAATACCATATGATGAAGCGAAGGAATTAGTAGTGAAAGGCTTGGCACCTCTAGGAGAGGAATATGCTTCTATCTTAAA
AGAAGGCTTTGAAAACCGCTGGGTGGATGTCCATGAGAATAAGGGGAAGAGAAGCGGTGCCTACTCTTCAGGAGCATACG
GAACAAATCCTTATATTTTAATGAACTGGCAGGACAATGTGAATAATTTATTTACATTAGCCCATGAATTTGGCCATTCT
GTGCATAGCTACTATACAAGAAAATCACAACCATATCCATATGGAAACTATTCCATCTTTGTAGCTGAAGTTGCTTCTAC
TTGTAATGAATCTTTGTTAAATGATTACTTGCTTAAAACGATAACGGATAAGCAAAAACGTTTATACTTGCTTAATTATT
TCCTAGAAGGATTCAGAGGTACAGTATTCCGCCAAACCATGTTTGCTGAATTTGAACAATTAATTCATGAAAAGGCAAGT
AATAATGAGCCATTGACTGCTGATTTATTGACAAAAGAATATTATGCATTAAATCAAAAGTATTTTGGCGAAGAAGATAT
CGTAATTGACGAAGAAATTGGATTAGAATGGTCAAGAATACCGCATTTCTATTATAATTTCTATGTGTACCAATATGCGA
CTGGCTATAGTGCTGCAACGGCTTTAAGTAAACAAATTTTGGAGGAAGGAAAGCCTGCTGTCGAACGATATATCGATTTC
CTAAAGGCTGGTAGCTCTGATTATCCAATTGAAGTGCTTAAAAAAGCTGGAGTAGACATGACAAGCAAAACACCAATTGA
AGAAGCATGTAAGGTTTTTGAAGAGAAATTAAATGAAATGGAAAGCTTATTGAATGAACTATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-591)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.829

96.54

0.481

Multiple sequence alignment