Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   BJR96_RS05455 Genome accession   NZ_LT545678
Coordinates   1055121..1056191 (-) Length   356 a.a.
NCBI ID   WP_000817924.1    Uniprot ID   -
Organism   Streptococcus agalactiae isolate SA111     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1050121..1061191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJR96_RS05435 (SA111_01083) - 1050656..1051408 (+) 753 WP_069986191.1 ABC transporter ATP-binding protein -
  BJR96_RS05440 (SA111_01084) - 1051410..1053365 (+) 1956 WP_069986755.1 FtsX-like permease family protein -
  BJR96_RS05445 (SA111_01085) braR 1053475..1054143 (+) 669 WP_000076365.1 response regulator transcription factor Regulator
  BJR96_RS05450 (SA111_01086) - 1054140..1055078 (+) 939 WP_000620982.1 sensor histidine kinase -
  BJR96_RS05455 (SA111_01087) xerS 1055121..1056191 (-) 1071 WP_000817924.1 tyrosine recombinase XerS Machinery gene
  BJR96_RS05460 (SA111_01088) - 1056696..1058312 (+) 1617 WP_070001273.1 peptide ABC transporter substrate-binding protein -
  BJR96_RS05465 (SA111_01089) - 1058345..1059118 (-) 774 WP_000622398.1 DUF3307 domain-containing protein -
  BJR96_RS05470 (SA111_01090) - 1059108..1059794 (-) 687 WP_000280308.1 SatD family protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41379.56 Da        Isoelectric Point: 9.3616

>NTDB_id=1027498 BJR96_RS05455 WP_000817924.1 1055121..1056191(-) (xerS) [Streptococcus agalactiae isolate SA111]
MKRELLLEKIDELKEIMPWYVLEYYQSKLSVPYSFTTLYEYLKEYRRFFEWLLDSGVANCHHIAEIELSVLENLTKKDME
AFILYLRERPLLNANTRQNGVSQTTINRTLAALSSLFKYLTEEVENADGEPYFYRNVMKKVSTKKKKETLASRAENIKQK
LFLGNETIEFLEYIDCEYQNKLSKRALAFFNKNKERDLAIIALLLASGVRLSEAVNLDLKDINLNVMVIDVTRKGGKRDS
VNVASFAKPYLANYLDIRKNRYKAENQDIALFLSEYRGVPNRIDASSVEKMVAKYSQDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDKL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1027498 BJR96_RS05455 WP_000817924.1 1055121..1056191(-) (xerS) [Streptococcus agalactiae isolate SA111]
ATGAAACGTGAATTACTACTCGAAAAAATCGATGAACTAAAAGAAATTATGCCTTGGTATGTTCTAGAATATTATCAATC
AAAGCTTTCTGTTCCTTATAGTTTCACAACACTCTACGAATATTTAAAAGAATATAGACGTTTTTTTGAATGGTTATTGG
ATTCTGGTGTTGCTAATTGTCATCATATTGCAGAAATTGAGCTTTCAGTTTTAGAAAACCTTACTAAGAAAGATATGGAA
GCTTTTATACTATATTTACGAGAACGCCCTTTATTAAATGCTAACACAAGGCAAAATGGGGTGTCTCAAACCACCATTAA
CAGAACTCTAGCTGCCTTATCTAGTCTTTTCAAATACCTTACTGAAGAGGTTGAGAATGCTGACGGGGAGCCTTACTTTT
ATCGCAATGTCATGAAAAAAGTCTCAACCAAAAAGAAAAAGGAAACTTTAGCTTCTCGGGCAGAAAATATTAAACAAAAG
TTATTTTTGGGCAATGAAACGATAGAATTCTTAGAGTATATAGATTGTGAATACCAAAACAAACTTTCCAAACGTGCTTT
AGCTTTTTTCAACAAAAATAAAGAGAGAGATTTAGCTATTATTGCTTTGCTACTAGCTTCAGGAGTGCGTCTATCTGAGG
CAGTAAACTTAGATTTAAAGGATATTAACCTTAATGTAATGGTTATTGATGTCACACGAAAAGGAGGGAAACGGGACTCT
GTCAATGTCGCTAGCTTTGCGAAACCCTATCTTGCTAATTATTTAGACATCCGTAAAAATAGATACAAAGCAGAAAATCA
GGACATTGCACTATTTTTATCAGAATACCGTGGGGTGCCAAATCGTATTGATGCTTCAAGTGTTGAGAAAATGGTCGCTA
AATATTCCCAGGATTTTAAGGTTCGTGTAACACCTCATAAACTAAGGCATACTCTTGCTACTAGGCTATATGATGCTACA
AAATCTCAAGTATTAGTTAGCCACCAATTAGGTCATGCTTCCACTCAAGTTACTGACCTATATACCCATATTGTTAACGA
TGAACAAAAGAACGCTTTAGACAAACTATAG

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(184-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

83.708

100

0.837