Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   AB3U99_RS01995 Genome accession   NZ_CP162613
Coordinates   391657..392613 (+) Length   318 a.a.
NCBI ID   WP_400245128.1    Uniprot ID   -
Organism   Niallia tiangongensis strain JL1B1071     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 386657..397613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3U99_RS01975 (AB3U99_01965) qoxA 387467..388396 (+) 930 WP_400245123.1 cytochrome aa3 quinol oxidase subunit II -
  AB3U99_RS01980 (AB3U99_01970) qoxB 388386..390338 (+) 1953 WP_400245124.1 cytochrome aa3 quinol oxidase subunit I -
  AB3U99_RS01985 (AB3U99_01975) qoxC 390338..390940 (+) 603 WP_400245126.1 cytochrome aa3 quinol oxidase subunit III -
  AB3U99_RS01990 (AB3U99_01980) qoxD 390947..391252 (+) 306 WP_031536248.1 cytochrome aa3 quinol oxidase subunit IV -
  AB3U99_RS01995 (AB3U99_01985) ceuB 391657..392613 (+) 957 WP_400245128.1 ABC transporter permease Machinery gene
  AB3U99_RS02000 (AB3U99_01990) - 392600..393556 (+) 957 WP_400245129.1 iron chelate uptake ABC transporter family permease subunit -
  AB3U99_RS02005 (AB3U99_01995) - 393550..394308 (+) 759 WP_400245130.1 ABC transporter ATP-binding protein -
  AB3U99_RS02010 (AB3U99_02000) - 394597..395553 (+) 957 WP_400245131.1 siderophore ABC transporter substrate-binding protein -
  AB3U99_RS02015 (AB3U99_02005) - 395742..396731 (+) 990 WP_400245132.1 Gfo/Idh/MocA family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35236.73 Da        Isoelectric Point: 9.8812

>NTDB_id=1027496 AB3U99_RS01995 WP_400245128.1 391657..392613(+) (ceuB) [Niallia tiangongensis strain JL1B1071]
MKIRHLNILLIVLSIISLFVGVIDIHPKNIFHLTADQKEILLISRFPRLISIIIAGVSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILVALMLFTGESPIVKMLIAFVFALGGTFLFMRILNMIKFKDAIFIPLIGLMLGNIVSSITTFFAMKYDLI
QNMSSWLQGDFSLIMEGRYELLYISIPVVIIAYLYANKFTIAGMGEDFSINLGLNHKRVVNIGLIIVALVSSVVLLTVGM
IPFLGLIIPNIVSLYRGDNLKNSLTHTALLGAVFVLFCDILGRVIIYPYEISIGVMVGVIGSGIFLYLLLRRKSYEAA

Nucleotide


Download         Length: 957 bp        

>NTDB_id=1027496 AB3U99_RS01995 WP_400245128.1 391657..392613(+) (ceuB) [Niallia tiangongensis strain JL1B1071]
ATGAAAATAAGACACTTAAATATATTGTTAATAGTATTATCCATCATCTCCCTATTTGTTGGAGTCATTGATATTCACCC
GAAAAATATTTTTCATTTAACAGCAGACCAAAAAGAAATTTTATTGATTAGCAGATTTCCACGCTTAATCAGCATTATCA
TTGCCGGCGTTAGCTTAAGCATTTGTGGACTCATTATGCAGCAAATATCGAGAAATAAATTTGTTTCTCCTACGACAGCT
GGTACGATGGACTGGGCCAGACTAGGGATATTGGTGGCCTTAATGCTTTTTACAGGAGAAAGCCCGATTGTAAAAATGTT
AATCGCATTCGTATTTGCGCTTGGCGGAACATTTCTGTTTATGCGAATACTGAATATGATCAAATTCAAAGATGCCATTT
TTATTCCTTTAATTGGTCTAATGCTTGGAAATATTGTAAGTTCCATTACTACTTTTTTTGCGATGAAATATGATTTAATA
CAAAATATGTCTTCATGGTTGCAAGGAGATTTTTCCTTAATCATGGAAGGAAGATACGAGCTTCTTTACATAAGTATTCC
GGTAGTAATTATTGCATATTTATACGCCAATAAATTCACTATTGCTGGAATGGGTGAAGACTTTTCGATTAATCTTGGAC
TAAATCACAAAAGGGTGGTGAATATAGGATTAATCATCGTTGCATTAGTATCTTCTGTTGTATTGCTGACAGTAGGAATG
ATTCCTTTTCTTGGATTGATTATTCCCAATATTGTTTCTTTATATCGGGGAGATAATTTAAAAAACAGCTTAACACATAC
TGCATTACTTGGCGCAGTATTTGTATTATTCTGTGATATTCTCGGAAGAGTGATTATTTATCCATATGAAATTTCAATTG
GTGTGATGGTGGGAGTCATCGGAAGTGGCATCTTCCTGTATTTACTTTTAAGGAGAAAGTCTTATGAAGCAGCCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.114

99.371

0.538

Multiple sequence alignment