Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AB1N70_RS09325 Genome accession   NZ_CP162603
Coordinates   1971684..1972313 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain PEC1020     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1966684..1977313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1N70_RS09305 ycbZ 1967074..1968834 (-) 1761 WP_029701764.1 Lon protease family protein -
  AB1N70_RS09310 matP 1969020..1969472 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  AB1N70_RS09315 ompA 1969547..1970599 (-) 1053 WP_000750418.1 porin OmpA -
  AB1N70_RS09320 sulA 1970956..1971465 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  AB1N70_RS09325 sxy/tfoX 1971684..1972313 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AB1N70_RS09330 yccS 1972276..1974438 (-) 2163 WP_000875041.1 YccS family putative transporter -
  AB1N70_RS09335 yccF 1974448..1974894 (-) 447 WP_001261235.1 YccF domain-containing protein -
  AB1N70_RS09340 helD 1975017..1977071 (+) 2055 WP_020232990.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1027427 AB1N70_RS09325 WP_000839153.1 1971684..1972313(+) (sxy/tfoX) [Escherichia coli strain PEC1020]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1027427 AB1N70_RS09325 WP_000839153.1 1971684..1972313(+) (sxy/tfoX) [Escherichia coli strain PEC1020]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment