Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AB0763_RS11165 Genome accession   NZ_CP162601
Coordinates   2553391..2553909 (-) Length   172 a.a.
NCBI ID   WP_306100610.1    Uniprot ID   A0AB39HDJ8
Organism   Vibrio sp. HB236076     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2548391..2558909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0763_RS11140 (AB0763_11140) rimM 2548464..2549018 (-) 555 WP_306100614.1 ribosome maturation factor RimM -
  AB0763_RS11145 (AB0763_11145) rpsP 2549040..2549288 (-) 249 WP_117233716.1 30S ribosomal protein S16 -
  AB0763_RS11150 (AB0763_11150) ffh 2549532..2550914 (-) 1383 WP_306100613.1 signal recognition particle protein -
  AB0763_RS11155 (AB0763_11155) - 2551130..2551924 (+) 795 WP_306100612.1 inner membrane protein YpjD -
  AB0763_RS11160 (AB0763_11160) - 2552024..2553307 (+) 1284 WP_306100611.1 HlyC/CorC family transporter -
  AB0763_RS11165 (AB0763_11165) luxS 2553391..2553909 (-) 519 WP_306100610.1 S-ribosylhomocysteine lyase Regulator
  AB0763_RS11170 (AB0763_11170) - 2553937..2554524 (-) 588 WP_306100609.1 hypothetical protein -
  AB0763_RS11175 (AB0763_11175) gshA 2554545..2556113 (-) 1569 WP_306100608.1 glutamate--cysteine ligase -
  AB0763_RS11180 (AB0763_11180) - 2556508..2556933 (-) 426 WP_306100607.1 YqaA family protein -
  AB0763_RS11185 (AB0763_11185) - 2556936..2557886 (-) 951 WP_306100606.1 NADP-dependent oxidoreductase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18946.70 Da        Isoelectric Point: 4.6963

>NTDB_id=1027406 AB0763_RS11165 WP_306100610.1 2553391..2553909(-) (luxS) [Vibrio sp. HB236076]
MPLLDSFTVDHTRMQAPAVRVAKTMTTPSGDTITVFDLRFTAPNKDILSEKGIHTLEHLFAGFMRQHLNGEQVEIIDLSP
MGCRTGFYMSVIGQPAEAQVATAWTAAMQDVIKVKQQSDIPELNEYQCGTASMHSLSEAQEIAKAIIEAGIQVNKNEDLA
LPESMLKELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1027406 AB0763_RS11165 WP_306100610.1 2553391..2553909(-) (luxS) [Vibrio sp. HB236076]
ATGCCTTTATTAGACAGTTTTACCGTTGACCATACACGAATGCAGGCACCTGCTGTTCGAGTTGCCAAAACCATGACAAC
CCCAAGCGGGGATACCATTACGGTATTTGATTTGCGCTTTACCGCACCGAACAAAGACATTTTATCGGAGAAGGGAATTC
ATACTCTCGAGCATTTATTTGCTGGTTTTATGCGTCAGCATTTAAATGGTGAACAGGTCGAAATCATTGATCTTTCGCCG
ATGGGCTGTCGTACCGGTTTTTACATGAGTGTGATTGGCCAGCCTGCAGAAGCGCAAGTCGCGACAGCTTGGACGGCCGC
GATGCAAGATGTAATTAAAGTGAAACAGCAAAGCGACATTCCAGAGCTCAATGAGTACCAATGTGGTACGGCGTCAATGC
ACTCTCTTAGCGAAGCTCAAGAGATCGCAAAAGCGATTATCGAGGCCGGTATTCAAGTGAATAAAAATGAAGACCTCGCC
TTGCCTGAGAGCATGCTTAAAGAACTCAAAGTCGATTGA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

81.287

99.419

0.808

Multiple sequence alignment