Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   AB0763_RS08605 Genome accession   NZ_CP162601
Coordinates   1949491..1950840 (-) Length   449 a.a.
NCBI ID   WP_306100516.1    Uniprot ID   A0AB39HHZ7
Organism   Vibrio sp. HB236076     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1944491..1955840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0763_RS08570 (AB0763_08570) moaE 1945122..1945586 (-) 465 WP_306100340.1 molybdopterin synthase catalytic subunit MoaE -
  AB0763_RS08575 (AB0763_08575) moaD 1945590..1945835 (-) 246 WP_306100341.1 molybdopterin synthase sulfur carrier subunit -
  AB0763_RS08580 (AB0763_08580) moaC 1945832..1946311 (-) 480 WP_306100515.1 cyclic pyranopterin monophosphate synthase MoaC -
  AB0763_RS08585 (AB0763_08585) moaB 1946341..1946853 (-) 513 WP_306100342.1 molybdenum cofactor biosynthesis protein B -
  AB0763_RS08590 (AB0763_08590) moaA 1946956..1947945 (-) 990 WP_306100343.1 GTP 3',8-cyclase MoaA -
  AB0763_RS08595 (AB0763_08595) yvcK 1948231..1949145 (+) 915 WP_306100344.1 uridine diphosphate-N-acetylglucosamine-binding protein YvcK -
  AB0763_RS08600 (AB0763_08600) - 1949140..1949478 (-) 339 WP_306100345.1 Hpt domain-containing protein -
  AB0763_RS08605 (AB0763_08605) luxO 1949491..1950840 (-) 1350 WP_306100516.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  AB0763_RS08610 (AB0763_08610) uvrB 1951060..1953090 (-) 2031 WP_306100346.1 excinuclease ABC subunit UvrB -
  AB0763_RS08620 (AB0763_08620) rsxA 1953976..1954554 (+) 579 WP_306100347.1 electron transport complex subunit RsxA -
  AB0763_RS08625 (AB0763_08625) rsxB 1954559..1955131 (+) 573 WP_306100348.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49762.77 Da        Isoelectric Point: 6.0247

>NTDB_id=1027399 AB0763_RS08605 WP_306100516.1 1949491..1950840(-) (luxO) [Vibrio sp. HB236076]
MVEDTASVAALYRSYLTPLNIDITIVGNGRDALDSLTRRIPDLILLDLRLPDMTGMDVLHEVKANHPDVPVIFMTAHGTI
DTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKASKLKSEHSAENPGYQGFIGSSHNMQQVYRTIDSAASSKASIFITG
ESGTGKEVCAEAIHAASQRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADGGTLFLDELCEMDLEL
QTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRDRGNDVVEIAYSLLGY
MSHEEGKNFVRFDPAVLERFAQYEWPGNVRQLQNVLRNVVVLNNGKEITMEMLPPPLNQVKPKMPEPVSSGTKPSVSEIC
PLWMTEKQAIENAIAACDGNIPRAAGYLDVSPSTIYRKKQQWDAQGAER

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=1027399 AB0763_RS08605 WP_306100516.1 1949491..1950840(-) (luxO) [Vibrio sp. HB236076]
ATGGTGGAAGACACCGCTTCGGTTGCGGCATTGTACCGTTCGTACCTGACACCACTGAATATTGATATCACCATTGTCGG
CAATGGTCGCGATGCGTTGGACAGTTTAACACGACGCATCCCAGATTTGATTTTGTTGGATTTGCGACTGCCGGACATGA
CTGGCATGGATGTTTTACACGAAGTCAAAGCCAATCACCCTGATGTTCCTGTGATTTTCATGACCGCGCACGGCACGATT
GATACCGCCGTTGAAGCGATGCGTCATGGCTCACAAGACTTTTTAATTAAACCTTGTGAAGCCGACCGATTGCGAGTTAC
GGTGAACAACGCCATTCGCAAGGCGAGTAAGTTGAAAAGCGAGCACTCAGCAGAAAACCCTGGTTATCAAGGCTTTATTG
GCAGTAGCCACAATATGCAGCAAGTGTATCGCACCATTGACTCGGCGGCGTCGAGCAAAGCGAGTATTTTTATTACTGGT
GAAAGTGGCACAGGCAAAGAAGTGTGCGCCGAGGCCATTCACGCCGCCAGTCAGCGCGGTGATAAACCATTTATTGCCAT
TAACTGTGCGGCGATACCCAAAGACCTGATCGAAAGTGAGTTGTTTGGTCATGTAAAAGGGGCCTTTACCGGCGCGGCAA
CGGATCGCCAAGGCGCGGCAGAGTTGGCCGATGGCGGCACACTATTTCTCGATGAGCTGTGTGAGATGGATTTGGAATTG
CAGACCAAACTCTTGCGCTTTATCCAAACGGGCACCTTTCAAAAAGTGGGCTCGTCAAAAATGAAAAGCGTCGATGTGCG
TTTTGTGTGTGCGACCAACCGAGATCCCTGGAAGGAAGTGCAAGAAGGGCGTTTTCGCGAAGATTTGTACTACCGCTTGT
ATGTCATTCCATTGCATTTACCGCCTTTGCGCGATCGCGGTAACGATGTGGTTGAAATTGCCTATTCGTTACTCGGCTAT
ATGTCGCACGAAGAGGGTAAAAACTTTGTCCGCTTCGACCCAGCGGTGCTTGAGCGTTTTGCCCAATATGAATGGCCGGG
TAACGTGCGACAATTGCAAAATGTACTGCGCAATGTGGTGGTGCTTAACAACGGTAAAGAAATCACCATGGAAATGCTGC
CACCACCTTTAAATCAGGTCAAACCTAAAATGCCAGAGCCCGTCAGTAGCGGAACAAAACCGTCGGTATCAGAAATTTGT
CCCTTGTGGATGACGGAAAAGCAAGCAATAGAAAATGCCATTGCCGCTTGTGATGGTAATATTCCTCGTGCCGCTGGTTA
TCTCGATGTCAGCCCATCGACGATCTATCGCAAAAAGCAGCAGTGGGACGCTCAAGGCGCTGAGAGATAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(133-298)

Bacterial regulatory protein, Fis family (HTH_8)

(402-438)

Response regulator receiver domain (Response_reg)

(2-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

84.045

99.109

0.833

Multiple sequence alignment