Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   AB0763_RS07270 Genome accession   NZ_CP162601
Coordinates   1649947..1651398 (+) Length   483 a.a.
NCBI ID   WP_306100083.1    Uniprot ID   A0AB39HBU3
Organism   Vibrio sp. HB236076     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1644947..1656398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0763_RS07245 (AB0763_07245) - 1645187..1646389 (+) 1203 WP_306100080.1 MFS transporter -
  AB0763_RS07250 (AB0763_07250) - 1646544..1647098 (+) 555 WP_306100123.1 DUF1415 domain-containing protein -
  AB0763_RS07255 (AB0763_07255) - 1647123..1647701 (+) 579 WP_306100081.1 nucleoside triphosphate pyrophosphohydrolase family protein -
  AB0763_RS07260 (AB0763_07260) - 1647896..1648729 (-) 834 WP_306100082.1 ATP-binding cassette domain-containing protein -
  AB0763_RS07265 (AB0763_07265) btuC 1648716..1649729 (-) 1014 WP_306100124.1 vitamin B12 ABC transporter permease BtuC -
  AB0763_RS07270 (AB0763_07270) sbcB 1649947..1651398 (+) 1452 WP_306100083.1 exodeoxyribonuclease I Machinery gene
  AB0763_RS07275 (AB0763_07275) - 1651643..1652023 (+) 381 WP_306100084.1 CidA/LrgA family protein -
  AB0763_RS07280 (AB0763_07280) - 1652026..1652715 (+) 690 WP_306100085.1 LrgB family protein -
  AB0763_RS07285 (AB0763_07285) cdd 1652837..1653724 (+) 888 WP_306100086.1 cytidine deaminase -
  AB0763_RS07290 (AB0763_07290) - 1653876..1654526 (-) 651 WP_306100087.1 thiopurine S-methyltransferase -
  AB0763_RS07295 (AB0763_07295) - 1654684..1655574 (+) 891 WP_306100088.1 phosphoribosylglycinamide formyltransferase -
  AB0763_RS07300 (AB0763_07300) ihfA 1655750..1656049 (-) 300 WP_306100089.1 integration host factor subunit alpha -

Sequence

Protein


Download         Length: 483 a.a.        Molecular weight: 54981.84 Da        Isoelectric Point: 5.4362

>NTDB_id=1027397 AB0763_RS07270 WP_306100083.1 1649947..1651398(+) (sbcB) [Vibrio sp. HB236076]
MDNNRAPSPADNREQKPTFFVFDYETWGTSPAKDRPSQFAGIRTDEDFNIIGEPVVLYCKLPSDYLPNPEAALITGITPQ
KAQQEGLIESEFIARIHQELSTPNTTSFGYNNIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGI
EWPENDDGFTSFKLEHLSVANGIEHANAHDALADVIATIEMAKKVKTAQPKLFDYFLSMRHKRKLNGLVDIVNMTPLMHV
SGMLGRECQYTSWVVPIAWHPTNNNAVIVADLAKDPSPLLELDAQQLAERLYTKRDQLGDKSPVPLKLIHLNKCPILAPA
KTLTADNAAHIGIDRQQCLDNLAQLRKHAELVNKVVDLYSNQPDFAADDDVDSQLYQGFFSSADKAAMSVVRTTQPENLE
GLDIQFSDPRLTPLLFRYRARNYPASLNQQEQEKWAEHCREHFTHALPDHLARIEQLVQQHHDDENKLAILKSVYRYTES
IAS

Nucleotide


Download         Length: 1452 bp        

>NTDB_id=1027397 AB0763_RS07270 WP_306100083.1 1649947..1651398(+) (sbcB) [Vibrio sp. HB236076]
TTGGATAATAACCGAGCGCCATCTCCAGCGGATAACCGCGAGCAAAAGCCAACATTTTTTGTTTTTGATTACGAAACATG
GGGCACCAGTCCCGCCAAAGACAGGCCGAGTCAGTTTGCGGGGATCAGAACCGATGAAGACTTTAACATCATTGGCGAGC
CTGTTGTGCTGTATTGCAAACTACCCAGCGATTATTTGCCCAACCCAGAAGCGGCCTTGATCACCGGTATTACGCCGCAA
AAAGCCCAACAAGAGGGCCTTATCGAAAGCGAGTTTATTGCTCGTATTCATCAAGAGCTTTCGACGCCCAATACCACCAG
CTTTGGCTACAACAATATTCGTTTTGACGATGAAGTCACTCGCTATACGTGTTATCGCAATTTTATCGACCCCTATGCAT
GGAGCTGGCAAAATGGCAATTCTCGTTGGGATTTACTTGACGTGCTGCGCGCTTGTCATGCCTTGCGTCCTGAAGGGATA
GAATGGCCAGAAAACGACGATGGCTTTACCAGTTTTAAACTCGAGCACCTTTCCGTTGCCAACGGCATTGAGCACGCGAA
TGCCCACGATGCCCTCGCCGATGTCATCGCCACGATAGAAATGGCCAAAAAAGTCAAAACGGCTCAACCTAAATTATTTG
ATTACTTTTTATCTATGCGCCACAAACGCAAGCTCAATGGTTTAGTCGACATCGTTAACATGACCCCCCTCATGCACGTG
TCCGGCATGTTGGGCAGAGAATGTCAATACACCAGTTGGGTTGTGCCTATCGCGTGGCACCCAACCAATAACAACGCGGT
CATCGTGGCCGACTTGGCTAAAGACCCATCGCCTTTACTTGAACTCGATGCACAGCAACTCGCCGAGCGACTTTACACCA
AGCGCGATCAATTGGGCGATAAGTCACCTGTGCCGCTCAAATTGATCCACCTAAATAAGTGCCCGATTCTCGCCCCGGCC
AAAACCTTGACCGCTGACAATGCCGCGCATATTGGCATCGATAGGCAGCAGTGTCTTGATAACTTAGCCCAGCTTCGCAA
ACACGCTGAATTGGTCAATAAAGTCGTTGACCTCTATTCAAACCAACCCGATTTTGCCGCTGATGATGACGTTGATAGTC
AACTCTACCAAGGCTTTTTCTCCTCTGCAGACAAAGCGGCAATGTCGGTGGTTCGCACAACCCAACCTGAAAATTTAGAG
GGCTTAGACATTCAATTTAGCGACCCGCGTTTAACACCTTTGTTGTTTCGCTATCGAGCGCGTAATTACCCAGCGAGCTT
AAACCAGCAAGAACAAGAAAAGTGGGCCGAACACTGCCGTGAGCATTTTACTCATGCGTTACCGGATCACTTAGCGCGAA
TCGAACAATTAGTTCAGCAACACCACGATGACGAAAACAAGTTGGCGATCCTCAAATCCGTGTATCGCTATACCGAATCC
ATTGCATCGTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(21-200)

Exonuclease C-terminal (Exonuc_X-T_C)

(220-479)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

72.399

97.516

0.706

Multiple sequence alignment