Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AABK14_RS00445 Genome accession   NZ_AP027886
Coordinates   96470..97099 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 2018-05-5CC     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 91470..102099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABK14_RS00425 (VEE47_00820) ycbZ 91871..93631 (-) 1761 WP_000156518.1 Lon protease family protein -
  AABK14_RS00430 (VEE47_00830) matP 93817..94269 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  AABK14_RS00435 (VEE47_00840) ompA 94345..95385 (-) 1041 WP_000750416.1 porin OmpA -
  AABK14_RS00440 (VEE47_00860) sulA 95742..96251 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  AABK14_RS00445 (VEE47_00870) sxy/tfoX 96470..97099 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AABK14_RS00450 (VEE47_00880) yccS 97062..99224 (-) 2163 WP_000875061.1 YccS family putative transporter -
  AABK14_RS00455 (VEE47_00890) yccF 99234..99680 (-) 447 WP_001261235.1 YccF domain-containing protein -
  AABK14_RS00460 (VEE47_00900) helD 99803..101857 (+) 2055 WP_001400180.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=102739 AABK14_RS00445 WP_000839153.1 96470..97099(+) (sxy/tfoX) [Escherichia coli strain 2018-05-5CC]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=102739 AABK14_RS00445 WP_000839153.1 96470..97099(+) (sxy/tfoX) [Escherichia coli strain 2018-05-5CC]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGTACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment