Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   AB4Y30_RS05915 Genome accession   NZ_CP162599
Coordinates   1218042..1219841 (+) Length   599 a.a.
NCBI ID   WP_368654567.1    Uniprot ID   A0AB39HT52
Organism   Ornithinibacillus sp. 4-3     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1213042..1224841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4Y30_RS05895 (AB4Y30_05895) - 1214000..1214512 (-) 513 WP_368654563.1 DUF3231 family protein -
  AB4Y30_RS05900 (AB4Y30_05900) spxA 1215142..1215537 (+) 396 WP_368654564.1 transcriptional regulator SpxA -
  AB4Y30_RS05905 (AB4Y30_05905) mecA 1215994..1216683 (+) 690 WP_368654565.1 adaptor protein MecA -
  AB4Y30_RS05910 (AB4Y30_05910) - 1216817..1217980 (+) 1164 WP_368654566.1 competence protein CoiA -
  AB4Y30_RS05915 (AB4Y30_05915) pepF 1218042..1219841 (+) 1800 WP_368654567.1 oligoendopeptidase F Regulator
  AB4Y30_RS05920 (AB4Y30_05920) - 1220840..1221205 (+) 366 WP_368654568.1 LytR/AlgR family response regulator transcription factor -
  AB4Y30_RS05925 (AB4Y30_05925) - 1221551..1224592 (+) 3042 WP_368654569.1 ATP-binding protein -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 69675.29 Da        Isoelectric Point: 4.7765

>NTDB_id=1027370 AB4Y30_RS05915 WP_368654567.1 1218042..1219841(+) (pepF) [Ornithinibacillus sp. 4-3]
MANNELKRREQIPVERTWDLTAIFETDEKWEESYKQLQADLPKIQEFKGQIGSSAQSLYDLFKLQDNLSERLGKLYTYSH
MKYDQDTTNASYQAMNGRADHLLTMFSSSMSFIVPEILEIDEKQLAAFLEEKEELRLYKKVLDEINRQRPHTLSESEETL
LAEASDSLQTASQAFSMLNNADLVFPKIKNEAGEEIELTHGRYVGFLESKDRRVRKEAFQAMFETYGKYKNTFAATLSGN
VKKDNFYAKVRNYESARQSALDSNNIPESVYDNLVEAVNEKLPLLHRYIELRKKVLKIDELHMYDLYTPLVDTDMKVTYE
EAQEYVLKSLAPMGEEYINIVEEGYNNRWIDVEENKGKRSGAYSSGAYGTNPYILLNWQDNVHDMYTLTHELGHSVHSYY
TRKEQPFRYGNYSIFVAEVASTCNEALLTDYLTKHLPDEKQKLYILNHFLEGFRGTVFRQTMFAEFEHQIHLEQQKGNAL
TADQLTEMYYELNKKYFGEEMHIDEEIGLEWSRIPHFYYNYYVYQYATGYSAATALAKQILEGKDDEVARYISFLKAGSS
DFPIEVLKKAGVDMTTKQPIIDALNVFEEKLAEMEALLS

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=1027370 AB4Y30_RS05915 WP_368654567.1 1218042..1219841(+) (pepF) [Ornithinibacillus sp. 4-3]
ATGGCGAACAATGAATTAAAGCGTCGTGAGCAAATTCCAGTCGAACGTACATGGGATTTAACAGCCATTTTTGAAACAGA
TGAGAAATGGGAAGAAAGCTATAAGCAGCTACAAGCAGACCTTCCAAAAATTCAAGAATTTAAAGGTCAGATCGGATCCT
CAGCACAAAGTCTATATGATTTATTTAAACTACAGGATAATCTTTCAGAGCGCTTAGGGAAGCTATATACATATTCGCAT
ATGAAATATGACCAAGACACAACTAATGCTTCTTATCAAGCGATGAATGGGCGTGCAGATCATTTGCTTACGATGTTTTC
TAGCTCAATGAGTTTTATCGTTCCAGAAATTCTTGAAATTGATGAAAAACAACTGGCAGCTTTTCTAGAGGAAAAAGAAG
AACTGCGTCTATACAAGAAAGTACTAGATGAAATTAATCGACAGCGTCCTCATACTTTAAGTGAAAGCGAAGAAACGCTA
TTAGCAGAAGCCTCAGATTCATTACAAACAGCATCACAAGCATTCAGCATGCTAAACAATGCTGATTTAGTATTCCCTAA
GATTAAAAATGAAGCTGGAGAAGAAATTGAATTAACACATGGACGCTACGTAGGCTTTTTAGAATCGAAGGATCGTCGCG
TTCGTAAAGAAGCGTTTCAAGCAATGTTTGAAACGTATGGAAAATACAAAAATACATTTGCTGCAACATTAAGTGGAAAT
GTAAAAAAGGATAATTTTTATGCTAAAGTGCGTAATTATGAATCTGCAAGACAATCTGCACTTGATAGCAATAATATTCC
TGAATCGGTATATGATAATTTAGTGGAAGCGGTCAATGAGAAATTACCTTTATTACATCGCTATATTGAATTGCGCAAAA
AGGTACTGAAAATTGACGAACTGCATATGTATGATTTGTATACGCCCCTTGTAGACACAGATATGAAAGTAACCTATGAA
GAGGCTCAAGAATATGTATTAAAGAGCTTAGCGCCAATGGGTGAAGAGTATATTAATATTGTTGAAGAAGGTTATAATAA
TCGCTGGATTGATGTAGAGGAGAATAAAGGAAAACGAAGTGGTGCTTATTCTTCTGGAGCATATGGAACAAATCCATATA
TTTTATTGAATTGGCAAGATAATGTGCATGATATGTACACATTAACACATGAATTAGGACACTCTGTTCATAGTTATTAC
ACAAGGAAAGAACAGCCATTTCGTTATGGAAATTACTCCATTTTCGTTGCCGAGGTAGCTTCTACCTGTAATGAAGCTCT
ACTCACAGATTATTTAACGAAGCATTTACCAGATGAGAAGCAAAAATTATATATTTTGAATCATTTTCTAGAAGGATTCC
GTGGAACAGTATTTCGTCAAACCATGTTTGCTGAATTTGAACATCAAATTCACTTAGAACAGCAAAAAGGGAATGCACTC
ACTGCAGATCAATTAACAGAGATGTATTATGAACTGAATAAGAAGTATTTTGGTGAAGAGATGCATATCGATGAAGAAAT
TGGTCTAGAATGGTCAAGAATCCCACATTTTTATTATAATTATTATGTGTATCAATATGCGACAGGCTATTCTGCTGCAA
CTGCATTAGCGAAACAAATTCTTGAAGGAAAAGATGATGAAGTAGCACGTTATATTAGCTTCTTAAAAGCAGGAAGCAGT
GATTTTCCAATCGAAGTATTGAAAAAAGCTGGGGTCGACATGACAACCAAACAACCAATAATCGATGCATTAAATGTTTT
TGAAGAAAAATTAGCAGAAATGGAAGCTTTGCTTTCGTAG

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(116-185)

Peptidase family M3 (Peptidase_M3)

(207-585)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.492

98.497

0.487

Multiple sequence alignment