Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AB4Y30_RS00525 Genome accession   NZ_CP162599
Coordinates   104411..105781 (+) Length   456 a.a.
NCBI ID   WP_368653582.1    Uniprot ID   A0AB39HQT2
Organism   Ornithinibacillus sp. 4-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 99411..110781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4Y30_RS00510 (AB4Y30_00510) - 99859..100401 (+) 543 WP_368653579.1 UvrB/UvrC motif-containing protein -
  AB4Y30_RS00515 (AB4Y30_00515) - 100398..101462 (+) 1065 WP_368653580.1 protein arginine kinase -
  AB4Y30_RS00520 (AB4Y30_00520) clpC 101486..103912 (+) 2427 WP_368653581.1 ATP-dependent protease ATP-binding subunit ClpC -
  AB4Y30_RS00525 (AB4Y30_00525) radA 104411..105781 (+) 1371 WP_368653582.1 DNA repair protein RadA Machinery gene
  AB4Y30_RS00530 (AB4Y30_00530) - 105968..107074 (+) 1107 WP_368653583.1 PIN/TRAM domain-containing protein -
  AB4Y30_RS00535 (AB4Y30_00535) gltX 107283..108755 (+) 1473 WP_368653584.1 glutamate--tRNA ligase -
  AB4Y30_RS00540 (AB4Y30_00540) cysE 109065..109709 (+) 645 WP_368655138.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50266.88 Da        Isoelectric Point: 8.2373

>NTDB_id=1027360 AB4Y30_RS00525 WP_368653582.1 104411..105781(+) (radA) [Ornithinibacillus sp. 4-3]
MAKRKVKFVCQECGYISPRWMGKCPGCNQWNTLHEEIEVSSRSGHVVGGEGFSKPEKITAIESEKEPRMGTSMREFNRVL
GGGIVPGSLVLIGGDPGIGKSTLLLQVSSQIAEKQLPVLYVSGEESVQQTKLRADRLQVASNSLYVVSETNLNMIRQHIE
SLKPSLVIIDSIQTIYREEVTSAPGSVTQVRECTSELMKLAKNNGIPIFIVGHVTKEGAIAGPRMLEHMVDAVLYFEGER
HHTYRILRSVKNRFGSTNEMGIFEMKEQGLREVLNPSEIFLEERSQGTSGSTVVASMEGTRPVLVEIQALISPSSFGNPR
RMATGIDNNRISLLMAVLEKRVGLMLQNQDAYIKVAGGVKLDEPAIDLAIAISIASSFRDQSTRPDDIFIGEVGLTGEIR
RVSRIEQRVQEAAKLGFKRVICSQNNLEGWSPPKNIQVIGVKTVQEALKMSMDSQK

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=1027360 AB4Y30_RS00525 WP_368653582.1 104411..105781(+) (radA) [Ornithinibacillus sp. 4-3]
GTGGCCAAGCGAAAAGTGAAGTTTGTTTGTCAGGAATGCGGGTATATTTCACCTAGATGGATGGGAAAGTGTCCTGGCTG
TAATCAATGGAATACATTACATGAAGAAATAGAAGTATCAAGTCGTAGTGGTCATGTTGTAGGTGGTGAAGGATTTAGTA
AGCCTGAGAAAATCACAGCAATTGAATCAGAGAAGGAACCACGAATGGGAACTTCCATGCGCGAATTTAATCGTGTGCTA
GGTGGAGGTATTGTTCCAGGCTCCCTTGTATTAATTGGTGGAGACCCGGGAATCGGGAAATCTACTTTATTACTTCAAGT
ATCCTCACAAATTGCTGAAAAACAATTGCCTGTGCTATATGTTTCTGGAGAGGAGTCTGTCCAACAGACAAAATTACGGG
CAGATCGTTTACAAGTAGCTTCAAATTCCCTTTATGTAGTTTCTGAAACGAATTTAAATATGATCCGTCAGCATATTGAG
TCTTTAAAACCCTCCCTTGTTATTATTGATTCGATCCAAACAATATATCGTGAAGAAGTAACAAGTGCACCAGGAAGTGT
AACACAAGTACGTGAATGTACGTCTGAATTAATGAAGCTTGCAAAAAATAATGGGATTCCAATATTTATTGTGGGGCATG
TGACAAAGGAAGGAGCAATTGCTGGTCCCAGAATGCTAGAGCATATGGTGGATGCAGTGCTCTACTTTGAGGGAGAGAGA
CATCATACATATCGAATTCTACGGAGCGTGAAAAACCGTTTTGGTAGTACGAATGAGATGGGAATCTTCGAAATGAAAGA
GCAGGGACTACGCGAGGTGTTAAATCCGTCAGAAATCTTTTTAGAGGAGCGTTCTCAAGGGACGTCAGGTTCAACCGTAG
TTGCTTCGATGGAAGGGACAAGACCTGTACTAGTAGAGATTCAAGCGTTAATTTCTCCATCTAGTTTTGGTAATCCGCGC
CGAATGGCAACAGGAATTGATAATAACCGTATTTCCTTATTAATGGCGGTACTCGAAAAACGTGTTGGATTAATGCTTCA
AAACCAAGATGCTTATATCAAAGTAGCAGGTGGTGTGAAATTAGATGAACCTGCCATTGATTTAGCCATTGCAATTAGTA
TCGCCTCGAGCTTCCGTGACCAATCAACAAGACCAGATGATATTTTTATAGGCGAAGTTGGTTTAACTGGTGAAATTAGA
AGGGTTTCTCGTATTGAACAAAGAGTGCAGGAAGCGGCTAAGCTTGGGTTTAAGCGAGTAATATGCTCTCAAAATAATTT
AGAAGGGTGGAGTCCACCAAAAAACATACAAGTAATAGGTGTTAAAACAGTACAAGAAGCATTGAAAATGAGCATGGATT
CACAAAAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(353-426)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(72-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

71.711

100

0.717
  radA Streptococcus mitis NCTC 12261

63.556

98.684

0.627
  radA Streptococcus mitis SK321

63.333

98.684

0.625
  radA Streptococcus pneumoniae Rx1

63.333

98.684

0.625
  radA Streptococcus pneumoniae D39

63.333

98.684

0.625
  radA Streptococcus pneumoniae R6

63.333

98.684

0.625
  radA Streptococcus pneumoniae TIGR4

63.333

98.684

0.625

Multiple sequence alignment