Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AB4P94_RS10575 Genome accession   NZ_CP162592
Coordinates   2316491..2317858 (+) Length   455 a.a.
NCBI ID   WP_058427705.1    Uniprot ID   A0A7Y8V0E3
Organism   Pseudomonas sp. B22129     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2311491..2322858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4P94_RS10550 (AB4P94_10530) - 2311695..2312402 (-) 708 WP_395610472.1 LuxR family transcriptional regulator -
  AB4P94_RS10555 (AB4P94_10535) - 2312792..2313568 (+) 777 WP_395610473.1 ferredoxin--NADP reductase -
  AB4P94_RS10560 (AB4P94_10540) mscL 2313615..2314031 (-) 417 WP_395610474.1 large-conductance mechanosensitive channel protein MscL -
  AB4P94_RS10565 (AB4P94_10545) katB 2314318..2315859 (+) 1542 WP_395610475.1 catalase KatB -
  AB4P94_RS10570 (AB4P94_10550) - 2315916..2316455 (+) 540 WP_395610476.1 ankyrin repeat domain-containing protein -
  AB4P94_RS10575 (AB4P94_10555) radA 2316491..2317858 (+) 1368 WP_058427705.1 DNA repair protein RadA Machinery gene
  AB4P94_RS10580 (AB4P94_10560) - 2317905..2318273 (-) 369 WP_395610477.1 PilZ domain-containing protein -
  AB4P94_RS10585 (AB4P94_10565) - 2318448..2320514 (+) 2067 WP_395610478.1 carbon starvation CstA family protein -
  AB4P94_RS10590 (AB4P94_10570) - 2320530..2320727 (+) 198 WP_003176208.1 YbdD/YjiX family protein -
  AB4P94_RS10595 (AB4P94_10575) yjiA 2320883..2321842 (+) 960 WP_395610479.1 GTPase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48745.28 Da        Isoelectric Point: 7.1316

>NTDB_id=1027318 AB4P94_RS10575 WP_058427705.1 2316491..2317858(+) (radA) [Pseudomonas sp. B22129]
MAKAKRMYGCTECGATFPKWAGQCTECGAWNTLTETMIESGGAAAPTGRAGWTGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIASRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIESIIA
TARIEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNKPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKESPPGIKIIGVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=1027318 AB4P94_RS10575 WP_058427705.1 2316491..2317858(+) (radA) [Pseudomonas sp. B22129]
ATGGCAAAGGCCAAGCGCATGTACGGCTGCACGGAGTGCGGCGCGACCTTTCCCAAGTGGGCCGGCCAGTGCACCGAGTG
CGGTGCGTGGAACACTCTGACTGAAACCATGATCGAAAGCGGCGGCGCGGCAGCCCCCACGGGGCGTGCCGGCTGGACGG
GGCAACAGGCGCAGATCAAGACGCTGGCCGAGGTCAGCGTCGAAGAAATCCCGCGTTTCTCCACCGCCTCCGGCGAGCTG
GACCGGGTACTTGGTGGCGGCCTGGTCGACGGCTCGGTGGTGCTGATCGGCGGCGACCCCGGCATCGGCAAATCCACGAT
CCTGCTGCAAACCTTGTGCAGCATCGCCAGCCGCATGCCGGCGCTGTATGTCACGGGCGAAGAGTCCCAGCAACAAGTGG
CCATGCGCGCGCGTCGCCTGGGCTTGCCCCAGGACCAATTGCGGGTGATGACCGAAACCTGCATCGAAAGCATCATCGCC
ACGGCGCGCATCGAAAAGCCCAAGGTGATGGTGATCGACTCCATCCAGACGATTTTCACCGAACAACTGCAATCGGCACC
GGGTGGCGTGTCCCAGGTGCGCGAAAGTGCGGCATTGCTGGTGCGGTACGCCAAGCAGAGCGGCACGGCGATCTTCCTCG
TCGGCCATGTGACCAAAGAAGGCGCGTTGGCGGGGCCGCGCGTGCTTGAGCACATGGTCGACACCGTGCTGTATTTCGAA
GGCGAGTCCGATGGGCGTCTGCGCTTGCTGCGGGCGGTGAAGAACCGCTTCGGCGCCGTGAACGAACTGGGTGTGTTTGC
CATGACTGACCGGGGTTTGAAAGAAGTCTCCAACCCGTCGGCGATTTTTCTCACGCGCGCCCAGGAAGAAGTCCCGGGCA
GCGTGGTGATGGCGACGTGGGAAGGCACCCGGCCGATGCTGGTGGAAGTTCAGGCGTTGGTGGATGACAGCCATTTGGCC
AACCCGCGCCGTGTGACCCTTGGCCTGGACCAGAATCGTTTGGCGATGCTGCTGGCGGTGCTGCACCGTCACGGCGGCAT
TCCCACGCATGACCAGGACGTGTTTCTCAACGTGGTGGGTGGGGTCAAGGTACTGGAAACCGCGTCCGACCTGGCGTTGA
TGGCAGCGGTGATGTCCAGCCTGCGCAATAAACCGCTGCCCCATGACTTGCTGGTGTTTGGCGAAGTCGGCCTGTCGGGC
GAGGTGCGCCCGGTGCCGAGCGGCCAGGAACGCCTGAAAGAAGCCGCCAAGCACGGCTTCAAGCGCGCGATCGTACCCAA
GGGCAACGCCCCGAAGGAATCGCCGCCGGGGATAAAAATTATCGGGGTCACGCGCCTGGAGCAGGCGCTGGATGCGTTGT
TCGAGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(80-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y8V0E3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.672

100

0.499
  radA Streptococcus mitis SK321

47.149

100

0.473
  radA Streptococcus mitis NCTC 12261

46.93

100

0.47
  radA Streptococcus pneumoniae Rx1

46.93

100

0.47
  radA Streptococcus pneumoniae D39

46.93

100

0.47
  radA Streptococcus pneumoniae R6

46.93

100

0.47
  radA Streptococcus pneumoniae TIGR4

46.93

100

0.47

Multiple sequence alignment