Detailed information NTG1027286

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ECTO143_RS05690
• Genome accession: NZ_LS999560
• Coordinates: 1167879..1168871 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli isolate EC-TO143
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1162879..1173871

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ECTO143_RS05660 (ECTO143_01128)	ispD	1162940..1163650 (+)	711	WP_021538312.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ECTO143_RS05665 (ECTO143_01129)	ispF	1163650..1164129 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ECTO143_RS05670 (ECTO143_01130)	truD	1164126..1165175 (+)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
ECTO143_RS05675 (ECTO143_01131)	surE	1165156..1165917 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ECTO143_RS05680 (ECTO143_01132)	pcm	1165911..1166537 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ECTO143_RS05685 (ECTO143_01133)	nlpD	1166722..1167816 (+)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
ECTO143_RS05690 (ECTO143_01134)	rpoS	1167879..1168871 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ECTO143_RS05695 (ECTO143_01135)	-	1169042..1169593 (-)	552	WP_001179444.1	flavodoxin family protein	-
ECTO143_RS05700 (ECTO143_01136)	-	1169818..1170861 (+)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
ECTO143_RS05705 (ECTO143_01137)	ygbN	1171004..1172368 (-)	1365	WP_000104433.1	GntP family transporter	-
ECTO143_RS05710 (ECTO143_01138)	ygbM	1172457..1173233 (-)	777	WP_001136914.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=1027286 ECTO143_RS05690 WP_000081550.1 1167879..1168871(+) (rpoS) [Escherichia coli isolate EC-TO143]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=1027286 ECTO143_RS05690 WP_000081550.1 1167879..1168871(+) (rpoS) [Escherichia coli isolate EC-TO143]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715