Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   AW03_RS06560 Genome accession   NZ_CP007173
Coordinates   1266459..1267595 (+) Length   378 a.a.
NCBI ID   WP_080030661.1    Uniprot ID   -
Organism   Bacillus subtilis HJ5     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1261459..1272595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AW03_RS06540 (AW03_012410) uxaA 1261909..1263402 (+) 1494 WP_015383416.1 altronate dehydratase family protein -
  AW03_RS06545 (AW03_012420) yjnA 1263441..1264205 (-) 765 WP_014476525.1 sulfite exporter TauE/SafE family protein -
  AW03_RS06550 (AW03_012430) bstD 1264430..1264894 (-) 465 WP_015383417.1 DinB family protein -
  AW03_RS06555 (AW03_012440) yjoB 1265043..1266314 (+) 1272 WP_015383418.1 ATPase YjoB -
  AW03_RS06560 (AW03_012450) rapC 1266459..1267595 (+) 1137 WP_080030661.1 response regulator aspartate phosphatase RapA Regulator
  AW03_RS06565 (AW03_012460) phrA 1267585..1267719 (+) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  AW03_RS06570 (AW03_012470) yjpA 1267749..1268006 (-) 258 WP_003232731.1 YciI family protein -
  AW03_RS06575 (AW03_012480) xlyB 1268126..1269079 (+) 954 WP_015483118.1 N-acetylmuramoyl-L-alanine amidase -
  AW03_RS06580 (AW03_012490) yjqA 1269119..1269496 (-) 378 WP_015483119.1 PH domain-containing protein -
  AW03_RS06585 (AW03_012500) pghB 1269601..1270203 (+) 603 WP_015383421.1 poly-gamma-glutamate hydrolase family protein -
  AW03_RS06590 (AW03_012510) xpdC 1270280..1271116 (+) 837 WP_003245071.1 manganese catalase family protein -
  AW03_RS06595 (AW03_012520) xkdA 1271160..1271756 (-) 597 WP_015483120.1 ImmA/IrrE family metallo-endopeptidase -
  AW03_RS06600 (AW03_012530) xre 1271918..1272259 (-) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45032.20 Da        Isoelectric Point: 4.7189

>NTDB_id=102726 AW03_RS06560 WP_080030661.1 1266459..1267595(+) (rapC) [Bacillus subtilis HJ5]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLDYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=102726 AW03_RS06560 WP_080030661.1 1266459..1267595(+) (rapC) [Bacillus subtilis HJ5]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCATCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTATTAGAAGACATCGAAGGGAATCAGTACAAGCTGACTGGGCTTCTCGATTATTACTTTAACTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCTCTCG
TCTCGGATGATATTGAGAAAGCCGAGTTTGCTTTTAAAATGGCCGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AAGAAGGCAATCCCCGCCTGATCAGTTCCGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTTGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATAGACACAGAATCAGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

45.213

99.471

0.45
  rapF Bacillus subtilis subsp. subtilis str. 168

41.425

100

0.415