Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AB4P96_RS06075 Genome accession   NZ_CP162589
Coordinates   1333151..1334518 (+) Length   455 a.a.
NCBI ID   WP_099547618.1    Uniprot ID   -
Organism   Pseudomonas sp. B19125     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1328151..1339518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4P96_RS06050 (AB4P96_06050) - 1328309..1329019 (-) 711 WP_017139313.1 LuxR family transcriptional regulator -
  AB4P96_RS06055 (AB4P96_06055) - 1329452..1330228 (+) 777 WP_138451905.1 ferredoxin--NADP reductase -
  AB4P96_RS06060 (AB4P96_06060) mscL 1330274..1330690 (-) 417 WP_017139311.1 large-conductance mechanosensitive channel protein MscL -
  AB4P96_RS06065 (AB4P96_06065) - 1330978..1332519 (+) 1542 WP_017139310.1 catalase -
  AB4P96_RS06070 (AB4P96_06070) - 1332576..1333115 (+) 540 WP_017139309.1 ankyrin repeat domain-containing protein -
  AB4P96_RS06075 (AB4P96_06075) radA 1333151..1334518 (+) 1368 WP_099547618.1 DNA repair protein RadA Machinery gene
  AB4P96_RS06080 (AB4P96_06080) - 1334545..1335279 (+) 735 WP_177033977.1 hypothetical protein -
  AB4P96_RS06085 (AB4P96_06085) - 1335305..1336051 (-) 747 WP_017139306.1 sulfite exporter TauE/SafE family protein -
  AB4P96_RS06090 (AB4P96_06090) - 1336311..1336808 (-) 498 WP_017139305.1 hypothetical protein -
  AB4P96_RS06095 (AB4P96_06095) - 1337195..1337563 (-) 369 WP_017139304.1 PilZ domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48833.41 Da        Isoelectric Point: 7.1317

>NTDB_id=1027259 AB4P96_RS06075 WP_099547618.1 1333151..1334518(+) (radA) [Pseudomonas sp. B19125]
MAKAKRMYGCTECGATFPKWAGQCTECGAWNTLTETMIESGGAAAPTGRAGWTGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIASRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIESIIA
TARIEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNMPKESPPGIKIIGVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=1027259 AB4P96_RS06075 WP_099547618.1 1333151..1334518(+) (radA) [Pseudomonas sp. B19125]
ATGGCAAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCGACCTTTCCCAAGTGGGCCGGCCAGTGCACCGAGTG
CGGCGCGTGGAACACCCTGACGGAAACCATGATCGAAAGCGGCGGCGCCGCAGCCCCCACCGGCCGCGCCGGCTGGACCG
GGCAACAGGCGCAGATCAAGACGTTGGCTGAAGTCAGCGTCGAGGAAATCCCACGTTTCTCCACGGCGTCCGGCGAGCTG
GACCGCGTGCTCGGCGGCGGGCTGGTGGACGGTTCGGTGGTGCTGATCGGCGGCGACCCCGGCATCGGCAAATCGACCAT
CCTGCTGCAAACCCTGTGCAGCATTGCCAGCCGCATGCCGGCGCTGTACGTCACGGGTGAGGAGTCCCAGCAGCAAGTGG
CCATGCGCGCCCGTCGCCTGGGCTTGCCCCAGGATCAACTGCGGGTCATGACCGAAACCTGCATCGAAAGCATCATCGCC
ACGGCCCGTATCGAAAAACCCAAGGTCATGGTGATCGACTCGATCCAGACGATTTTCACCGAGCAGCTGCAATCGGCACC
CGGCGGCGTGTCCCAGGTGCGCGAAAGTGCGGCGCTGCTGGTGCGGTATGCCAAGCAGAGCGGTACGGCGATTTTTCTGG
TGGGCCACGTGACCAAAGAGGGCGCCTTGGCCGGGCCGCGAGTGCTTGAGCATATGGTCGACACCGTACTGTATTTCGAA
GGCGAATCCGATGGCCGTTTGCGTTTGCTGCGGGCGGTGAAGAACCGTTTCGGCGCGGTCAACGAATTGGGCGTGTTCGC
CATGACCGACCGGGGGTTGAAAGAAGTCTCCAACCCCTCGGCGATTTTTCTCACCCGCGCCCAGGAAGAAGTGCCTGGCA
GTGTGGTGATGGCGACGTGGGAAGGTACCCGGCCAATGTTGGTGGAAGTGCAGGCGCTGGTGGATGACAGCCACTTGGCC
AACCCGCGCCGGGTCACCCTCGGCCTGGATCAGAACCGCCTGGCGATGTTGCTCGCTGTGCTGCACCGTCACGGCGGTAT
TCCCACCCATGACCAGGACGTATTCCTCAACGTGGTCGGCGGGGTCAAGGTGCTGGAAACCGCCTCCGACCTGGCGTTGA
TGGCGGCGGTGATGTCGAGCCTGCGCAATCGCCCGCTGCCCCATGACTTGCTGGTATTCGGCGAAGTCGGCCTGTCGGGC
GAGGTACGCCCGGTGCCGAGTGGCCAGGAGCGCCTGAAAGAAGCGGCCAAGCACGGTTTCAAACGCGCGATCGTGCCCAA
AGGCAATATGCCGAAGGAATCGCCGCCGGGAATCAAGATTATTGGCGTCACGCGCCTGGAACAGGCGCTGGATGCACTGT
TCGAATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(80-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.672

100

0.499
  radA Streptococcus mitis SK321

46.93

100

0.47
  radA Streptococcus mitis NCTC 12261

46.711

100

0.468
  radA Streptococcus pneumoniae Rx1

46.711

100

0.468
  radA Streptococcus pneumoniae D39

46.711

100

0.468
  radA Streptococcus pneumoniae R6

46.711

100

0.468
  radA Streptococcus pneumoniae TIGR4

46.711

100

0.468

Multiple sequence alignment