Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AB4P90_RS24965 Genome accession   NZ_CP162588
Coordinates   5349922..5351289 (-) Length   455 a.a.
NCBI ID   WP_019818022.1    Uniprot ID   A0A0W0N9A8
Organism   Pseudomonas sp. B16120     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5344922..5356289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4P90_RS24945 (AB4P90_24880) yjiA 5345830..5346786 (-) 957 WP_014720013.1 GTPase -
  AB4P90_RS24950 (AB4P90_24885) - 5346971..5347168 (-) 198 WP_003194308.1 YbdD/YjiX family protein -
  AB4P90_RS24955 (AB4P90_24890) - 5347184..5349250 (-) 2067 WP_014720014.1 carbon starvation CstA family protein -
  AB4P90_RS24960 (AB4P90_24895) - 5349425..5349793 (+) 369 WP_020301754.1 PilZ domain-containing protein -
  AB4P90_RS24965 (AB4P90_24900) radA 5349922..5351289 (-) 1368 WP_019818022.1 DNA repair protein RadA Machinery gene
  AB4P90_RS24970 (AB4P90_24905) - 5351325..5351864 (-) 540 WP_014720017.1 ankyrin repeat domain-containing protein -
  AB4P90_RS24975 (AB4P90_24910) katB 5351922..5353463 (-) 1542 WP_020301753.1 catalase KatB -
  AB4P90_RS24980 (AB4P90_24915) mscL 5353751..5354167 (+) 417 WP_019818024.1 large-conductance mechanosensitive channel protein MscL -
  AB4P90_RS24985 (AB4P90_24920) - 5354209..5354985 (-) 777 WP_019818025.1 ferredoxin--NADP reductase -
  AB4P90_RS24990 (AB4P90_24925) - 5355422..5356132 (+) 711 WP_060768002.1 LuxR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48747.22 Da        Isoelectric Point: 6.8987

>NTDB_id=1027240 AB4P90_RS24965 WP_019818022.1 5349922..5351289(-) (radA) [Pseudomonas sp. B16120]
MAKAKRMYGCTECGATFPKWAGQCSECGAWNTLTETMIESGGAAAPTGRAGWTGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIASRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIESIIA
TARIEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPSGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=1027240 AB4P90_RS24965 WP_019818022.1 5349922..5351289(-) (radA) [Pseudomonas sp. B16120]
ATGGCAAAGGCCAAGCGCATGTACGGCTGCACAGAGTGCGGCGCGACCTTTCCCAAATGGGCGGGCCAGTGCTCCGAATG
CGGCGCGTGGAACACCCTGACTGAAACCATGATCGAGAGCGGCGGTGCCGCGGCCCCCACCGGTCGTGCCGGCTGGACCG
GGCAACAGGCGCAGATCAAGACCCTGGCCGAAGTCAGCGTCGAAGAGATCCCGCGCTTTTCCACCGCCTCCGGCGAGTTG
GACCGGGTGCTGGGCGGTGGCCTGGTGGACGGCTCGGTGGTATTGATTGGCGGTGACCCGGGCATCGGCAAGTCCACGAT
CCTGCTGCAAACCCTGTGCAGCATCGCCAGCCGCATGCCTGCGTTGTATGTCACCGGCGAAGAGTCCCAGCAGCAAGTGG
CCATGCGTGCCCGGCGCCTGGGCTTGCCCCAGGACCAACTGCGGGTCATGACCGAAACCTGCATCGAAAGCATCATCGCC
ACGGCGCGCATCGAAAAGCCCAAGGTCATGGTTATCGACTCGATCCAGACGATTTTCACTGAACAACTGCAATCGGCACC
CGGCGGTGTGTCCCAGGTGCGCGAAAGCGCGGCGCTGTTGGTGCGTTACGCCAAGCAGAGCGGCACGGCGATCTTCCTGG
TCGGCCACGTGACCAAGGAAGGCGCACTGGCCGGGCCACGGGTGTTGGAACACATGGTCGACACCGTGTTGTATTTCGAA
GGGGAATCCGACGGTCGCCTGCGCTTGCTGCGAGCGGTGAAGAACCGTTTTGGCGCCGTCAACGAACTGGGGGTGTTCGC
CATGACCGACCGGGGGCTGAAAGAAGTCTCGAACCCCTCGGCGATTTTTCTCACCCGCGCTCAGGAAGAAGTCCCAGGCA
GTGTGGTGATGGCCACCTGGGAAGGCACCCGGCCGATGCTGGTGGAAGTCCAGGCGTTGGTGGATGACAGCCATTTGGCC
AACCCCCGCCGGGTCACGCTGGGGCTGGACCAGAACCGCCTGGCGATGCTGCTGGCGGTGCTGCACCGGCATGGCGGCAT
TCCGACCCACGACCAGGATGTGTTCCTCAACGTGGTGGGCGGGGTCAAGGTGTTGGAGACCGCGTCCGACCTGGCGTTGA
TGGCGGCGGTGATGTCCAGCCTGCGTAATCGGCCGTTGCCCCATGACTTGCTGGTGTTTGGGGAGGTGGGGTTGTCGGGC
GAAGTGCGCCCGGTGCCGAGTGGGCAGGAGCGGTTGAAGGAAGCGGCCAAGCATGGCTTCAAACGGGCGATTGTGCCCAA
GGGCAATGCGCCGAAGGAGGCGCCGTCGGGGTTGCAGATTATTGCTGTGACGCGGCTGGAGCAGGCGTTGGATGCCCTGT
TCGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(80-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0W0N9A8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.234

100

0.495
  radA Streptococcus pneumoniae Rx1

46.491

100

0.466
  radA Streptococcus pneumoniae D39

46.491

100

0.466
  radA Streptococcus pneumoniae R6

46.491

100

0.466
  radA Streptococcus pneumoniae TIGR4

46.491

100

0.466
  radA Streptococcus mitis SK321

46.491

100

0.466
  radA Streptococcus mitis NCTC 12261

46.272

100

0.464

Multiple sequence alignment