Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AB4P95_RS26480 Genome accession   NZ_CP162583
Coordinates   5722095..5723462 (+) Length   455 a.a.
NCBI ID   WP_008084632.1    Uniprot ID   J2X2B3
Organism   Pseudomonas sp. A1437     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5717095..5728462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4P95_RS26455 (AB4P95_26415) - 5717350..5718063 (-) 714 WP_115146532.1 autoinducer binding domain-containing protein -
  AB4P95_RS26460 (AB4P95_26420) - 5718382..5719158 (+) 777 WP_261736603.1 ferredoxin--NADP reductase -
  AB4P95_RS26465 (AB4P95_26425) mscL 5719205..5719618 (-) 414 WP_042561176.1 large-conductance mechanosensitive channel protein MscL -
  AB4P95_RS26470 (AB4P95_26430) - 5719904..5721444 (+) 1541 Protein_5212 catalase -
  AB4P95_RS26475 (AB4P95_26435) - 5721504..5722049 (+) 546 WP_395598048.1 ankyrin repeat domain-containing protein -
  AB4P95_RS26480 (AB4P95_26440) radA 5722095..5723462 (+) 1368 WP_008084632.1 DNA repair protein RadA Machinery gene
  AB4P95_RS26485 (AB4P95_26445) - 5723575..5723946 (-) 372 WP_261736606.1 PilZ domain-containing protein -
  AB4P95_RS26490 (AB4P95_26450) - 5724106..5726172 (+) 2067 WP_042561172.1 carbon starvation CstA family protein -
  AB4P95_RS26495 (AB4P95_26455) - 5726188..5726385 (+) 198 WP_042561171.1 YbdD/YjiX family protein -
  AB4P95_RS26500 (AB4P95_26460) yjiA 5726549..5727520 (+) 972 WP_042561170.1 GTPase -
  AB4P95_RS26505 (AB4P95_26465) - 5727643..5728353 (-) 711 WP_395598049.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48805.25 Da        Isoelectric Point: 6.8987

>NTDB_id=1027219 AB4P95_RS26480 WP_008084632.1 5722095..5723462(+) (radA) [Pseudomonas sp. A1437]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMIESGGATAPSGRTGWTGQQAQIKTLAEVSVEEIPRFSTASSEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLAKSMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARQEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKESPPGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=1027219 AB4P95_RS26480 WP_008084632.1 5722095..5723462(+) (radA) [Pseudomonas sp. A1437]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCAACCTTTCCCAAGTGGGCCGGCCAGTGTGGCGAGTG
CGGTGCCTGGAATACGCTGACCGAAACCATGATCGAGAGCGGCGGCGCGACGGCGCCCTCCGGACGCACCGGTTGGACCG
GGCAGCAGGCGCAGATCAAAACCCTGGCCGAAGTCAGCGTCGAAGAGATTCCACGGTTTTCCACTGCCTCCAGTGAGCTG
GATCGTGTACTGGGCGGCGGCCTGGTCGATGGTTCGGTGGTGTTGATCGGCGGCGACCCGGGTATCGGCAAGTCGACGAT
TCTGTTGCAGACCCTGTGCAACCTCGCCAAGAGCATGCCGGCGCTGTACGTCACCGGCGAGGAATCCCAACAGCAAGTGG
CCATGCGCGCCCGCCGCCTCGGTTTGCCTCAGGATCAGCTACGGGTGATGACCGAAACCTGCATCGAGACCATCATCGCC
ACGGCACGTCAGGAAAAGCCCAAGGTGATGGTGATCGACTCGATCCAGACGATCTTCACCGAACAACTGCAATCGGCGCC
CGGCGGCGTGTCTCAGGTGCGCGAGAGTGCGGCGTTGCTGGTGCGCTATGCCAAGCAAAGCGGCACGGCGATTTTCCTCG
TCGGCCACGTGACCAAGGAAGGCGCACTGGCCGGCCCGCGCGTGCTTGAGCACATGGTCGACACCGTGCTGTATTTCGAA
GGCGAATCCGATGGTCGACTGCGTTTGCTGCGGGCGGTGAAGAACCGCTTCGGCGCCGTCAACGAGTTGGGCGTGTTCGG
CATGACCGACAAGGGTTTGAAAGAGGTCTCCAACCCTTCGGCGATTTTTCTCACGCGCGCTCAGGAAGAAGTCCCGGGCA
GTGTCGTGATGGCGACGTGGGAAGGCACCCGCCCGATGCTGGTGGAAGTGCAGGCGCTGGTCGATGACAGTCATCTGGCC
AACCCGCGCCGTGTGACGTTGGGGCTGGATCAGAACCGATTGGCGATGCTACTGGCCGTTTTGCATCGCCATGGCGGCAT
ACCGACTCACGATCAGGATGTGTTCCTCAACGTGGTCGGCGGGGTGAAGGTGCTGGAAACCGCATCCGACCTGGCGCTGA
TGGCGGCCGTGATGTCGAGCCTGCGCAATCGGCCGTTGCCCCATGACCTGCTGGTGTTTGGCGAAGTCGGGTTGTCCGGC
GAAGTGCGCCCGGTACCAAGCGGTCAGGAGCGGTTGAAGGAAGCGGCCAAGCATGGCTTCAAACGCGCCATTGTGCCGAA
GGGCAATGCGCCGAAGGAGTCACCGCCGGGGCTGCAGATCATTGCCGTGACCCGACTGGAACAGGCCCTCGACGCGCTTT
TCGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(74-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J2X2B3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.234

100

0.495
  radA Streptococcus mitis SK321

46.711

100

0.468
  radA Streptococcus mitis NCTC 12261

46.491

100

0.466
  radA Streptococcus pneumoniae Rx1

46.491

100

0.466
  radA Streptococcus pneumoniae D39

46.491

100

0.466
  radA Streptococcus pneumoniae R6

46.491

100

0.466
  radA Streptococcus pneumoniae TIGR4

46.491

100

0.466

Multiple sequence alignment