Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ECTO75_RS08930 Genome accession   NZ_LS998785
Coordinates   1857742..1858218 (-) Length   158 a.a.
NCBI ID   WP_001186747.1    Uniprot ID   -
Organism   Escherichia coli isolate EC-TO75     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1852742..1863218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECTO75_RS08885 (ECTO75_01816) tmaR 1853881..1854210 (+) 330 WP_000450409.1 DUF496 family protein -
  ECTO75_RS08890 (ECTO75_01817) - 1854311..1854676 (-) 366 WP_089069062.1 EutP/PduV family microcompartment system protein -
  ECTO75_RS24635 - 1854947..1855318 (-) 372 WP_001295631.1 IS110 family transposase -
  ECTO75_RS08905 - 1856134..1856214 (-) 81 Protein_1732 hypothetical protein -
  ECTO75_RS08910 (ECTO75_01818) - 1856314..1856466 (-) 153 Protein_1733 DUF5983 family protein -
  ECTO75_RS08915 (ECTO75_01819) - 1856463..1856837 (-) 375 WP_001514886.1 TA system toxin CbtA family protein -
  ECTO75_RS08920 (ECTO75_01820) - 1856927..1857295 (-) 369 WP_001360327.1 type IV toxin-antitoxin system YeeU family antitoxin -
  ECTO75_RS08925 (ECTO75_01822) yeeT 1857458..1857679 (-) 222 WP_000692286.1 DUF987 domain-containing protein -
  ECTO75_RS08930 (ECTO75_01823) radC 1857742..1858218 (-) 477 WP_001186747.1 RadC family protein Machinery gene
  ECTO75_RS08935 (ECTO75_01824) - 1858234..1858707 (-) 474 WP_000855059.1 antirestriction protein -
  ECTO75_RS08945 (ECTO75_01825) - 1859049..1859870 (-) 822 WP_001234565.1 DUF932 domain-containing protein -
  ECTO75_RS08955 (ECTO75_01826) - 1859989..1860184 (-) 196 Protein_1740 DUF905 family protein -
  ECTO75_RS08960 (ECTO75_01827) - 1860255..1863101 (-) 2847 WP_057915995.1 Ag43/Cah family autotransporter adhesin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17642.22 Da        Isoelectric Point: 6.9859

>NTDB_id=1027216 ECTO75_RS08930 WP_001186747.1 1857742..1858218(-) (radC) [Escherichia coli isolate EC-TO75]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=1027216 ECTO75_RS08930 WP_001186747.1 1857742..1858218(-) (radC) [Escherichia coli isolate EC-TO75]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

59.615

65.823

0.392

Multiple sequence alignment