Detailed information NTG1027202

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ECTO75_RS05365
• Genome accession: NZ_LS998785
• Coordinates: 1093613..1094605 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli isolate EC-TO75
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1088613..1099605

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ECTO75_RS05335 (ECTO75_01087)	ispD	1088674..1089384 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ECTO75_RS05340 (ECTO75_01088)	ispF	1089384..1089863 (+)	480	WP_001374730.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ECTO75_RS05345 (ECTO75_01089)	truD	1089860..1090909 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
ECTO75_RS05350 (ECTO75_01090)	surE	1090890..1091651 (+)	762	WP_001374723.1	5'/3'-nucleotidase SurE	-
ECTO75_RS05355 (ECTO75_01091)	pcm	1091645..1092271 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ECTO75_RS05360 (ECTO75_01092)	nlpD	1092456..1093550 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
ECTO75_RS05365 (ECTO75_01093)	rpoS	1093613..1094605 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ECTO75_RS05370 (ECTO75_01094)	ygbN	1094699..1096063 (-)	1365	WP_000104456.1	GntP family transporter	-
ECTO75_RS05375 (ECTO75_01095)	ygbM	1096152..1096928 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
ECTO75_RS05380 (ECTO75_01096)	ygbL	1096933..1097571 (-)	639	WP_001278994.1	aldolase	-
ECTO75_RS05385 (ECTO75_01097)	otnK	1097568..1098830 (-)	1263	WP_000590392.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=1027202 ECTO75_RS05365 WP_000081550.1 1093613..1094605(+) (rpoS) [Escherichia coli isolate EC-TO75]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=1027202 ECTO75_RS05365 WP_000081550.1 1093613..1094605(+) (rpoS) [Escherichia coli isolate EC-TO75]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715