Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AB4P97_RS19535 Genome accession   NZ_CP162582
Coordinates   4172244..4173611 (-) Length   455 a.a.
NCBI ID   WP_008084632.1    Uniprot ID   J2X2B3
Organism   Pseudomonas sp. A1230     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4167244..4178611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4P97_RS19510 (AB4P97_19455) - 4167356..4168066 (+) 711 WP_395601495.1 GntR family transcriptional regulator -
  AB4P97_RS19515 (AB4P97_19460) yjiA 4168189..4169160 (-) 972 WP_042561170.1 GTPase -
  AB4P97_RS19520 (AB4P97_19465) - 4169324..4169521 (-) 198 WP_042561171.1 YbdD/YjiX family protein -
  AB4P97_RS19525 (AB4P97_19470) - 4169537..4171603 (-) 2067 WP_042561172.1 carbon starvation CstA family protein -
  AB4P97_RS19530 (AB4P97_19475) - 4171763..4172131 (+) 369 WP_115146536.1 PilZ domain-containing protein -
  AB4P97_RS19535 (AB4P97_19480) radA 4172244..4173611 (-) 1368 WP_008084632.1 DNA repair protein RadA Machinery gene
  AB4P97_RS19540 (AB4P97_19485) - 4173657..4174202 (-) 546 WP_115146535.1 ankyrin repeat domain-containing protein -
  AB4P97_RS19545 (AB4P97_19490) - 4174262..4175803 (-) 1542 WP_115146534.1 catalase -
  AB4P97_RS19550 (AB4P97_19495) mscL 4176089..4176502 (+) 414 WP_042561176.1 large-conductance mechanosensitive channel protein MscL -
  AB4P97_RS19555 (AB4P97_19500) - 4176549..4177325 (-) 777 WP_395601496.1 ferredoxin--NADP reductase -
  AB4P97_RS19560 (AB4P97_19505) - 4177644..4178357 (+) 714 WP_042561178.1 autoinducer binding domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48805.25 Da        Isoelectric Point: 6.8987

>NTDB_id=1027188 AB4P97_RS19535 WP_008084632.1 4172244..4173611(-) (radA) [Pseudomonas sp. A1230]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMIESGGATAPSGRTGWTGQQAQIKTLAEVSVEEIPRFSTASSEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLAKSMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARQEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKESPPGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=1027188 AB4P97_RS19535 WP_008084632.1 4172244..4173611(-) (radA) [Pseudomonas sp. A1230]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCAACCTTTCCCAAGTGGGCCGGCCAGTGTGGCGAGTG
CGGTGCCTGGAATACGCTGACCGAAACCATGATCGAGAGCGGCGGCGCGACGGCGCCCTCCGGACGCACCGGTTGGACCG
GGCAGCAGGCGCAGATCAAAACCCTGGCCGAAGTCAGCGTCGAAGAGATTCCACGGTTTTCCACTGCCTCCAGTGAGCTG
GATCGTGTACTGGGCGGCGGCCTGGTCGATGGCTCGGTGGTGTTGATCGGCGGCGACCCGGGTATCGGCAAGTCGACGAT
TCTGTTGCAGACCCTGTGCAACCTCGCCAAGAGCATGCCGGCGCTGTACGTCACAGGCGAGGAATCCCAACAGCAAGTGG
CCATGCGCGCCCGCCGCCTCGGTTTGCCTCAGGATCAGCTACGGGTGATGACCGAAACCTGCATCGAGACCATCATCGCC
ACGGCACGTCAGGAAAAGCCCAAGGTGATGGTGATCGACTCGATCCAGACGATCTTCACCGAACAACTGCAATCGGCGCC
CGGCGGCGTGTCTCAGGTGCGCGAGAGTGCGGCGTTGCTGGTGCGCTATGCCAAGCAAAGCGGCACGGCGATTTTCCTCG
TTGGCCACGTGACCAAGGAAGGCGCACTGGCCGGCCCGCGCGTGCTTGAGCACATGGTCGACACCGTGCTGTATTTCGAA
GGCGAATCCGATGGTCGACTGCGTTTGCTGCGGGCGGTGAAGAACCGCTTCGGCGCCGTCAACGAGTTGGGCGTGTTCGG
CATGACCGACAAGGGTTTGAAAGAGGTCTCCAACCCTTCGGCGATTTTTCTCACGCGCGCTCAGGAGGAAGTCCCGGGCA
GTGTCGTGATGGCGACGTGGGAAGGCACCCGGCCGATGCTGGTGGAAGTGCAGGCGCTGGTCGATGACAGTCATCTGGCC
AACCCGCGCCGTGTGACGCTGGGTCTGGATCAGAACCGATTGGCGATGCTACTGGCCGTTTTGCATCGCCATGGCGGCAT
ACCGACTCACGATCAGGATGTGTTCCTCAACGTGGTCGGCGGGGTGAAGGTGCTGGAAACCGCATCCGACCTGGCGCTGA
TGGCAGCCGTGATGTCGAGCCTGCGCAATCGGCCGTTGCCCCATGACTTGCTGGTGTTTGGCGAAGTCGGGTTGTCCGGC
GAAGTGCGTCCGGTACCAAGCGGTCAGGAGCGGTTGAAGGAAGCGGCCAAGCATGGCTTCAAACGCGCCATTGTGCCGAA
GGGCAATGCGCCGAAGGAATCACCACCGGGGCTGCAGATCATTGCCGTGACCCGACTGGAACAGGCCCTCGACGCGCTTT
TCGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(74-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J2X2B3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.234

100

0.495
  radA Streptococcus mitis SK321

46.711

100

0.468
  radA Streptococcus mitis NCTC 12261

46.491

100

0.466
  radA Streptococcus pneumoniae Rx1

46.491

100

0.466
  radA Streptococcus pneumoniae D39

46.491

100

0.466
  radA Streptococcus pneumoniae R6

46.491

100

0.466
  radA Streptococcus pneumoniae TIGR4

46.491

100

0.466

Multiple sequence alignment