Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   PA5486_RS26980 Genome accession   NZ_LS998783
Coordinates   5506662..5507171 (+) Length   169 a.a.
NCBI ID   WP_023101689.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa isolate     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5501662..5512171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PA5486_RS35530 (PA5486_05235) - 5501966..5502217 (+) 252 WP_003117142.1 hypothetical protein -
  PA5486_RS26965 (PA5486_05236) - 5502361..5503830 (+) 1470 WP_003093821.1 inorganic phosphate transporter -
  PA5486_RS26970 (PA5486_05237) - 5504056..5505255 (+) 1200 WP_023101691.1 tyrosine-type recombinase/integrase -
  PA5486_RS26975 (PA5486_05238) - 5505252..5506316 (+) 1065 WP_023101690.1 PDDEXK nuclease domain-containing protein -
  PA5486_RS26980 (PA5486_05239) radC 5506662..5507171 (+) 510 WP_023101689.1 JAB domain-containing protein Machinery gene
  PA5486_RS26985 (PA5486_05240) - 5507451..5507801 (+) 351 WP_023101688.1 DUF2958 domain-containing protein -
  PA5486_RS26990 (PA5486_05241) - 5507867..5508145 (+) 279 WP_023101687.1 hypothetical protein -
  PA5486_RS26995 (PA5486_05242) - 5508865..5509695 (+) 831 WP_023101686.1 DUF932 domain-containing protein -
  PA5486_RS27000 (PA5486_05243) - 5509771..5511837 (+) 2067 WP_023101685.1 ParB/RepB/Spo0J family partition protein -
  PA5486_RS27005 (PA5486_05244) - 5511901..5512110 (+) 210 WP_023101684.1 hypothetical protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18738.32 Da        Isoelectric Point: 6.8460

>NTDB_id=1027140 PA5486_RS26980 WP_023101689.1 5506662..5507171(+) (radC) [Pseudomonas aeruginosa isolate]
MSQLSFSSFDSSLMVRDTQGRYLLATAEQILDAARQAIERKMQRGTSFTSPAAVKEYLCAKLAGFEHEVFAVLFLDTHHR
LIEYAEMFRGTIDGASVYPRELVKEALRHNAAAVIISHNHPSGNPEPSQADKVLTQRLNEALRLVDVRVLDHVIVAGNST
ASFAERGLI

Nucleotide


Download         Length: 510 bp        

>NTDB_id=1027140 PA5486_RS26980 WP_023101689.1 5506662..5507171(+) (radC) [Pseudomonas aeruginosa isolate]
ATGTCGCAACTGTCCTTTTCCTCGTTCGATTCCTCGCTGATGGTGCGTGACACGCAGGGCCGCTACCTGCTGGCGACTGC
CGAGCAGATTCTGGACGCCGCGCGCCAGGCCATCGAGCGCAAGATGCAGCGCGGTACGTCGTTCACATCGCCGGCGGCAG
TCAAGGAATACCTGTGCGCCAAGCTGGCCGGCTTCGAGCATGAAGTCTTCGCGGTGCTGTTCCTCGATACACACCATCGG
TTGATCGAATACGCCGAGATGTTCCGCGGCACCATCGACGGCGCATCGGTGTATCCGCGCGAGCTGGTCAAGGAAGCGCT
GCGGCACAACGCGGCGGCGGTCATCATTTCGCACAACCACCCGAGCGGCAATCCCGAGCCGTCGCAGGCCGACAAGGTAC
TGACGCAGCGGCTCAATGAGGCGCTGAGGCTGGTGGACGTGCGCGTGCTGGATCACGTCATCGTCGCGGGCAACAGCACG
GCATCCTTCGCCGAACGCGGCCTGATTTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(48-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

44.366

84.024

0.373