Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   AB3N25_RS12110 Genome accession   NZ_CP162552
Coordinates   2412210..2413181 (-) Length   323 a.a.
NCBI ID   WP_025905417.1    Uniprot ID   A0AAJ4SJJ8
Organism   Mammaliicoccus sciuri strain MSS74     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2407210..2418181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3N25_RS12085 (AB3N25_12090) - 2407765..2408286 (+) 522 WP_058591620.1 GrpB family protein -
  AB3N25_RS12090 (AB3N25_12095) murB 2408356..2409273 (+) 918 WP_058612029.1 UDP-N-acetylmuramate dehydrogenase -
  AB3N25_RS12095 (AB3N25_12100) - 2409318..2410355 (-) 1038 WP_058612030.1 siderophore ABC transporter substrate-binding protein -
  AB3N25_RS12100 (AB3N25_12105) - 2410458..2411258 (-) 801 WP_058591622.1 ABC transporter ATP-binding protein -
  AB3N25_RS12105 (AB3N25_12110) - 2411255..2412220 (-) 966 WP_065380990.1 iron chelate uptake ABC transporter family permease subunit -
  AB3N25_RS12110 (AB3N25_12115) ceuB 2412210..2413181 (-) 972 WP_025905417.1 ABC transporter permease Machinery gene
  AB3N25_RS12115 (AB3N25_12120) - 2413308..2413724 (-) 417 WP_196968047.1 FixH family protein -
  AB3N25_RS12120 (AB3N25_12125) nrdF 2413874..2414845 (-) 972 WP_048539937.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  AB3N25_RS12125 (AB3N25_12130) nrdE 2414874..2416979 (-) 2106 WP_058612033.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  AB3N25_RS12130 (AB3N25_12135) nrdI 2416942..2417340 (-) 399 WP_025905413.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -

Sequence

Protein


Download         Length: 323 a.a.        Molecular weight: 35476.97 Da        Isoelectric Point: 10.7243

>NTDB_id=1027127 AB3N25_RS12110 WP_025905417.1 2412210..2413181(-) (ceuB) [Mammaliicoccus sciuri strain MSS74]
MGKFLMRLDVLIILLVIATFFSIFIGVSEVKPLHILNLTDEQKNILVSSRIPRTVSIIISGSSLAICGLIMQQLTRNKFV
SPTTAGTMDWARLGILISLIAFPEANILLKLLFATLLSLFGTMLFMQILRRIQFKDVIFIPLVGIMLGNIVSSFSSFVAL
RTNAVQSIGNFMQGNFSIITSGRYEILYISIPLLILAFIFANQFTIAGMGKDFSVNLGLNYQKVVNIGLIIASIITALVV
VTVGMMPFLGLIIPNLVSIFRGDHLKNALPHTAVFGALFVMICDVIGRLIIFPYEITIGLTIGVIGSFIFIVLLMKGRSR
NAQ

Nucleotide


Download         Length: 972 bp        

>NTDB_id=1027127 AB3N25_RS12110 WP_025905417.1 2412210..2413181(-) (ceuB) [Mammaliicoccus sciuri strain MSS74]
ATGGGAAAGTTTTTAATGCGTTTAGATGTTTTGATTATTTTATTAGTAATTGCAACGTTCTTCTCTATATTTATAGGTGT
TTCAGAAGTAAAACCATTACATATATTAAATTTAACAGACGAACAGAAGAACATTTTAGTATCAAGTAGAATTCCAAGAA
CAGTCAGTATTATTATCTCAGGTAGCTCGTTAGCTATTTGTGGACTGATTATGCAACAGCTTACAAGAAATAAATTCGTT
TCTCCAACAACTGCAGGGACAATGGATTGGGCCAGATTAGGTATATTAATTTCTCTTATCGCTTTTCCAGAAGCCAACAT
ACTACTTAAATTATTATTTGCTACATTATTAAGTTTATTTGGAACAATGCTATTCATGCAAATTCTCCGTAGAATTCAAT
TTAAAGATGTTATTTTTATACCATTAGTTGGTATTATGCTCGGAAACATAGTGTCAAGTTTTTCATCTTTTGTTGCATTA
CGTACAAATGCTGTACAAAGTATTGGTAATTTTATGCAAGGTAATTTCTCAATTATTACAAGCGGTAGATATGAAATTCT
TTATATTAGTATTCCGTTATTGATTTTAGCATTTATATTTGCGAATCAATTTACGATTGCTGGTATGGGTAAAGATTTTA
GTGTGAATTTAGGACTTAATTATCAAAAAGTCGTCAATATCGGACTGATTATTGCCTCAATCATTACGGCACTTGTTGTT
GTAACAGTTGGTATGATGCCATTCTTAGGTTTAATTATTCCTAACTTAGTTTCAATATTCAGAGGAGATCATTTAAAAAA
TGCATTGCCGCATACAGCTGTATTTGGTGCATTGTTTGTTATGATTTGTGATGTAATAGGTCGATTAATTATATTCCCTT
ATGAAATTACAATTGGTTTAACAATTGGTGTGATTGGTAGTTTCATATTTATAGTATTGCTGATGAAAGGACGTTCAAGA
AATGCTCAATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(14-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.104

98.142

0.502

Multiple sequence alignment