Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   AB3N25_RS06925 Genome accession   NZ_CP162552
Coordinates   1389283..1391673 (+) Length   796 a.a.
NCBI ID   WP_231493086.1    Uniprot ID   A0AAW5LKC4
Organism   Mammaliicoccus sciuri strain MSS74     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1384283..1396673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3N25_RS06905 (AB3N25_06905) sal(A) 1384590..1386215 (+) 1626 WP_196968311.1 ABC-F type ribosomal protection protein Sal(A) -
  AB3N25_RS06910 (AB3N25_06910) - 1386275..1387423 (+) 1149 WP_196968310.1 cysteine desulfurase family protein -
  AB3N25_RS06915 (AB3N25_06915) mnmA 1387416..1388525 (+) 1110 WP_049318720.1 tRNA 2-thiouridine(34) synthase MnmA -
  AB3N25_RS06920 (AB3N25_06920) - 1388612..1389280 (+) 669 WP_058611664.1 tetratricopeptide repeat protein -
  AB3N25_RS06925 (AB3N25_06925) recD2 1389283..1391673 (+) 2391 WP_231493086.1 ATP-dependent RecD-like DNA helicase Machinery gene
  AB3N25_RS06930 (AB3N25_06930) alaS 1391922..1394552 (+) 2631 WP_218697428.1 alanine--tRNA ligase -
  AB3N25_RS06935 (AB3N25_06935) - 1394620..1394889 (+) 270 WP_037588397.1 IreB family regulatory phosphoprotein -
  AB3N25_RS06940 (AB3N25_06940) ruvX 1394882..1395310 (+) 429 WP_025904238.1 Holliday junction resolvase RuvX -
  AB3N25_RS06945 (AB3N25_06945) - 1395330..1395635 (+) 306 WP_025904237.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 796 a.a.        Molecular weight: 90375.46 Da        Isoelectric Point: 4.5970

>NTDB_id=1027115 AB3N25_RS06925 WP_231493086.1 1389283..1391673(+) (recD2) [Mammaliicoccus sciuri strain MSS74]
MENLSLFDLSHVKGEVIRILFQNSDNYYTVIKVDVIDSNEDFDQEVTIVGYLPQIVEGETYLFKGKVTNHPKYGKQLQAE
TFEKELPQTKQGVIHYLSSDLFKGIGKKTAETIVDKLGEDALQKIIDDPDVLKEIPKLNKQKRDTIAESIRENQAIEHIM
IKLNELGFGPKLAMAIYQFYKEETLNIIKQSPYRLVMDINGIGFQRADQIAEQVGISKDHHDRLVAGVSYFLDQQSLQNG
HTFLPVDILTNGAYELLNHNQPEVVNKDQINGVIIEMSEENKLIIENDNCFLPSLYYSEAKSVQIIHRLYQHQDELKEIE
KSDLQLHIGQIEDMNDVSYADGQKLALETAINHKMMLLTGGPGTGKTTVIRGICELYSEIHGVSLNYDDYQEGTDFPIVL
AAPTGRAAKRLSESTGLEAMTIHRLIGWSKDTQPDDVLDNDIHAHLIILDEMSMVDTWLMYQFLRAVPDYAQIIFVGDED
QLPSVGPGQIFKDLIDSKVIPRVNLTEVYRQQEGSSIIDLAHKIKNGLPVSINEKHHDRSFIPCSSNQIATVVEKVVQGA
VNKGYNMQDIQVLAPIYRGPAGINKLNELLQDILNPKDEDTRFLQYGDIEYRENDKVLQLINRPDDNVFNGDIGVVTGVY
KAEENALGKDVVIVDYEGNDITYTKQDLSEITHAYCCSIHKSQGSEFPIVIMPIVRQYFRMLQKNILYTGLTRAKQSLVV
CGEEQAFNQGIQTLGHERMTSFDTKLKMYFDTDVESDTESETESIQTKHIILTEDNMFEIDPMINMNDKTPYDFMK

Nucleotide


Download         Length: 2391 bp        

>NTDB_id=1027115 AB3N25_RS06925 WP_231493086.1 1389283..1391673(+) (recD2) [Mammaliicoccus sciuri strain MSS74]
TTGGAAAACTTATCTTTATTTGATCTTTCACATGTAAAAGGTGAAGTTATTAGAATTCTTTTTCAAAACAGTGATAACTA
TTATACCGTTATTAAAGTCGATGTGATAGATTCAAATGAAGATTTTGATCAAGAAGTCACAATTGTTGGTTACTTACCTC
AAATAGTTGAAGGAGAAACGTACCTTTTCAAAGGTAAAGTAACAAACCATCCGAAATACGGTAAACAACTACAAGCTGAA
ACTTTTGAAAAAGAATTACCACAAACAAAACAAGGTGTTATTCATTACTTATCGAGTGATTTATTTAAAGGTATTGGTAA
GAAAACAGCAGAAACAATCGTGGACAAACTAGGTGAAGATGCACTTCAGAAAATTATAGATGACCCAGATGTCCTTAAAG
AAATACCTAAACTTAACAAGCAAAAAAGAGATACGATTGCAGAATCAATACGTGAGAATCAAGCCATTGAACATATTATG
ATTAAACTTAATGAACTTGGTTTCGGTCCGAAACTCGCGATGGCTATTTATCAATTTTATAAAGAAGAAACACTTAATAT
TATTAAACAATCTCCATATCGTTTGGTGATGGATATAAATGGTATAGGGTTTCAAAGAGCTGACCAAATAGCCGAACAAG
TTGGAATTTCTAAAGATCATCATGATCGACTTGTAGCAGGTGTCAGTTACTTTTTAGACCAGCAATCATTACAGAATGGT
CACACATTTTTACCTGTTGATATATTGACCAATGGGGCATATGAATTGTTAAATCATAATCAACCCGAAGTTGTGAATAA
AGATCAGATTAATGGTGTCATTATAGAGATGAGTGAAGAAAATAAACTTATTATCGAAAATGATAATTGTTTTTTACCTT
CACTTTATTATTCAGAAGCGAAAAGTGTGCAAATTATTCATAGGCTTTATCAACATCAAGATGAACTTAAAGAAATTGAA
AAAAGTGATCTTCAATTACACATTGGTCAAATTGAAGATATGAATGATGTTTCATATGCAGATGGCCAAAAATTAGCGTT
AGAAACAGCCATTAATCATAAAATGATGCTTTTAACAGGTGGACCTGGAACAGGTAAGACGACAGTTATTCGAGGCATTT
GTGAGTTGTATTCTGAAATACACGGTGTGAGTTTAAATTATGATGATTACCAAGAAGGAACGGACTTTCCAATTGTATTA
GCAGCACCGACTGGACGTGCAGCCAAAAGACTAAGTGAATCTACTGGACTAGAAGCGATGACGATTCATAGATTAATTGG
ATGGAGTAAAGATACACAACCTGATGATGTGTTAGATAATGACATACATGCCCATTTAATCATTCTAGATGAAATGTCTA
TGGTAGATACATGGTTGATGTATCAATTTTTAAGAGCAGTCCCTGATTATGCTCAAATCATATTTGTAGGTGACGAAGAT
CAATTACCATCAGTTGGTCCAGGTCAGATTTTTAAAGATTTAATTGATTCTAAAGTGATACCGAGAGTGAACTTAACAGA
AGTTTATAGACAACAAGAAGGATCATCCATCATAGATTTAGCGCATAAAATAAAAAATGGATTGCCTGTTTCTATTAATG
AAAAACATCACGACCGCTCATTTATTCCTTGCAGTAGTAATCAAATTGCGACAGTTGTAGAAAAGGTCGTACAAGGTGCT
GTTAATAAAGGATATAATATGCAAGATATTCAAGTGTTAGCTCCAATATACCGTGGACCAGCAGGTATTAATAAATTAAA
TGAATTATTGCAAGATATATTAAATCCGAAAGATGAAGATACAAGATTTCTTCAATATGGAGATATTGAATATCGTGAAA
ATGATAAAGTACTTCAACTTATTAATCGTCCAGATGATAATGTATTTAATGGTGATATTGGTGTAGTGACAGGTGTTTAT
AAAGCAGAAGAAAATGCACTTGGTAAAGATGTCGTCATTGTAGATTATGAAGGGAATGACATAACATACACTAAACAAGA
TTTATCAGAAATTACACATGCTTATTGTTGTTCAATTCATAAATCACAAGGGTCGGAATTCCCGATAGTCATCATGCCTA
TTGTCAGACAATACTTTAGAATGTTACAAAAAAACATTCTATATACCGGACTTACACGTGCGAAGCAGTCGCTTGTTGTG
TGCGGTGAAGAACAAGCCTTTAATCAAGGTATCCAAACGCTAGGTCATGAGAGAATGACATCGTTTGATACGAAATTAAA
AATGTATTTCGATACTGATGTTGAATCGGATACTGAGTCTGAAACAGAATCTATTCAAACGAAACATATTATTTTAACTG
AAGATAATATGTTTGAAATCGATCCGATGATTAATATGAATGATAAAACACCATATGATTTTATGAAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(339-545)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(586-644)

Helix-hairpin-helix containing domain (HHH_RecD2)

(152-243)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(673-721)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.751

100

0.503

Multiple sequence alignment