Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   PA5486_RS13485 Genome accession   NZ_LS998783
Coordinates   2708520..2709014 (-) Length   164 a.a.
NCBI ID   WP_025297464.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa isolate     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2703520..2714014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PA5486_RS13465 (PA5486_02618) - 2704700..2705716 (-) 1017 WP_032728035.1 IS30-like element IS1394 family transposase -
  PA5486_RS13470 (PA5486_02619) - 2706096..2707241 (+) 1146 WP_124108033.1 hypothetical protein -
  PA5486_RS13475 (PA5486_02620) - 2707418..2708095 (+) 678 WP_025297466.1 inovirus Gp2 family protein -
  PA5486_RS13480 - 2708130..2708324 (+) 195 WP_025297465.1 AlpA family transcriptional regulator -
  PA5486_RS13485 (PA5486_02621) radC 2708520..2709014 (-) 495 WP_025297464.1 RadC family protein Machinery gene
  PA5486_RS13490 (PA5486_02622) - 2709134..2709598 (-) 465 WP_025297463.1 hypothetical protein -
  PA5486_RS13495 (PA5486_02623) - 2709606..2710619 (-) 1014 WP_025297462.1 hypothetical protein -
  PA5486_RS13500 (PA5486_02624) - 2710794..2711141 (+) 348 WP_025297461.1 helix-turn-helix domain-containing protein -
  PA5486_RS13505 (PA5486_02625) - 2711487..2712380 (-) 894 WP_025297460.1 hypothetical protein -
  PA5486_RS13510 (PA5486_02626) - 2712473..2713477 (-) 1005 WP_025297459.1 YqaJ viral recombinase family protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18106.74 Da        Isoelectric Point: 6.4053

>NTDB_id=1027108 PA5486_RS13485 WP_025297464.1 2708520..2709014(-) (radC) [Pseudomonas aeruginosa isolate]
MTAKFKAGESAGTYIADAPVTEADIVEMAQHLASKRLRKGQALHQPKEVFGYLQLLLQDYEHEVFALLLLDSKHRVIRFE
ELFRGTLDSASVYPREVVKVALEHNAAAIVLVHNHPSGDPEPSHADRVLTSRLKQALEMVGVRTLDHIIVGAEGCVSLAE
QGYV

Nucleotide


Download         Length: 495 bp        

>NTDB_id=1027108 PA5486_RS13485 WP_025297464.1 2708520..2709014(-) (radC) [Pseudomonas aeruginosa isolate]
ATGACTGCCAAATTCAAGGCCGGCGAGTCCGCTGGCACCTACATCGCCGATGCACCGGTGACCGAAGCCGATATCGTGGA
AATGGCTCAACATCTGGCCAGCAAGCGGCTGCGTAAAGGCCAGGCCTTGCATCAACCCAAGGAGGTCTTTGGCTACCTGC
AGCTCCTGCTGCAGGACTATGAACATGAGGTATTTGCACTGCTACTGCTGGACAGCAAACACCGTGTCATTCGATTTGAG
GAGCTGTTTCGCGGCACCCTGGACAGTGCCAGTGTCTATCCCCGCGAAGTCGTCAAAGTAGCGCTGGAACACAATGCAGC
AGCAATAGTACTGGTGCATAACCACCCTTCCGGTGATCCGGAGCCAAGCCATGCAGACCGTGTCCTGACCAGCAGGCTCA
AGCAAGCACTCGAGATGGTGGGCGTACGCACGCTCGACCACATCATCGTGGGAGCTGAAGGCTGCGTATCGCTCGCCGAA
CAGGGATACGTGTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(44-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

43.796

83.537

0.366